Pieris brassicae (large cabbage white): 123710588
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Entry
123710588 CDS
T08632
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pbx
Pieris brassicae (large cabbage white)
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbx03016
]
123710588
Enzymes [BR:
pbx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
123710588
Transfer RNA biogenesis [BR:
pbx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
123710588
Prokaryotic type
tRNA splicing ligases
123710588
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
123710588
NCBI-ProteinID:
XP_045518556
LinkDB
All DBs
Position
6:complement(8912288..8920464)
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AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKINAHCWKIKKGFQPNMKVEGVFYVNNTLEKLMLDELRNSCRPGMT
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMSNPDSIVSPGGVGFD
INCGVRLLRTNLHEKDVIPIKEQLAQSLFDHIPVGVGSKGIIPMNARDMEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KFAAGKMGLERLGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQIDVNDRQLACARIN
SKEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKVE
EHVIDGKLMTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGSMGTCSYVLTGTHQGM
TETFGSTCHGAGRALSRAKSRRNIDYKDVLNKLESMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggttcgccaatacaacgaggagctcaaatatctggaaaagatcaatgcgcattgt
tggaaaattaaaaaaggctttcaacccaatatgaaggttgagggcgtgttttatgtaaat
aacactttagagaaacttatgttagatgagctacgaaactcctgtagacctggaatgaca
gggggatttttacctggcgtaaaacaaatagccaacgtagctgcattgccgggtattgtt
ggtcgatctgttggtttaccagatgttcattctggatatggttttgctattggaaacatg
gcagcttttgatatgtctaatccagactctattgtttccccgggaggtgtaggatttgat
attaattgtggagttaggcttttaagaacaaatctacatgagaaagatgttattcctatt
aaggagcaattggcccaaagtttatttgatcatattcctgttggagtaggttcaaaagga
atcattcctatgaatgctagagatatggaagaggcgttggaaatgggcatggattggtca
ctaagggagggttatgtgtgggctgaggataaggagcattgtgaagaatatggaagaatg
ttaaatgctgatccttcaaaagtaagtcttagagcaaagaaaagaggtttgccacaactc
gggactttaggtgctggcaatcattatgctgaaattcaagttgttgatgaaatatatgat
aaatttgctgctggtaaaatgggacttgagagattaggtcaagtatgtgttatgatacat
tcaggaagtcgaggttttgggcaccaagtagcaactgatgctttggtgcaaatggagaaa
gcaatgaaaagagatcagattgatgtaaatgatcgacaattggcctgtgcaagaattaat
tcaaaagaaggtcaggattacctaaaagctatggcagcagcagctaattttgcttgggtc
aatcgcagttcaatgacttttctaacaagacaagcttttgccaagcaattcaaaatggct
cctgatgatctagatatgcatgttatttatgatgtttcacacaatattgctaaagtagaa
gaacatgtaatagatggaaaattaatgactcttttagttcatagaaagggttccaccaga
gcttttccacctcaccatcctcttatacctgtagattatcaattaactggccagcctgta
ttaataggtggttctatgggtacatgtagctatgtcctcacgggtactcatcaaggcatg
actgaaacatttggatccacttgccatggagcaggaagagctctttctcgagcaaagtcg
aggcgtaacatagattataaggatgtattgaacaaactagaaagcatgggaatatcaatt
agagttgcatcgccaaaattagttatggaagaagctccagaatcatataaaaatgttaca
gatgttgtcaacacttgccatgcagctgggataagtaaaaaaactgtcaaattgcgtcct
attgctgtaataaaggggtag
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