Pieris brassicae (large cabbage white): 123712454
Help
Entry
123712454 CDS
T08632
Name
(RefSeq) fibril-forming collagen alpha chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
pbx
Pieris brassicae (large cabbage white)
Pathway
pbx04512
ECM-receptor interaction
pbx04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123712454
04518 Integrin signaling
123712454
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pbx00536
]
123712454
Glycosaminoglycan binding proteins [BR:
pbx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123712454
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
FnI_RECK
NELL_VWC_C
CFC
Motif
Other DBs
NCBI-GeneID:
123712454
NCBI-ProteinID:
XP_045521507
LinkDB
All DBs
Position
7:complement(6342757..6356955)
Genome browser
AA seq
1491 aa
AA seq
DB search
MWQAVIACLALLLAPVVSKELSDGRDDFDVPQAQEADLINYDDYNPFGEDENAVIAERDF
RGSTTNQRGYGRPQQQVDRVPPVKCLDLGRSWSDGDTWKRDNCTLCQCFSGRVNCSVLPA
CLSAPSTSRPPVFTSPQPAVTVRGVQGVPGDEGPPGPPGSPGVGGIPGAPGIPGAVGPMP
DVNAYLAQLAATAVGDKGPAFDPYHYMQASVGAPGIRGIPGPQGPPGPQGFQGPRGEPGE
SGSPGPLGPPGERGPIGVPGKDGLPGEDGEPGPPGAAGQTGSRGSPGVPGIQGLKGHRGF
DGKDGAKGDQGLPGEKGPTGLSGQMGPAGPVGPVGPRGERGREGPSGTPGLRGVDGAPGT
PGLIGNVGKPGSPGFPGSPGLKGEIGVQGPKGSQGIQGPRGEPGRPGQSGEAGPPGLSGR
DGIPGEKGIQGQAGSAGPQGFPGSRGTPGVAGDPGIPGSKGMPGQPGERGLKGEIGIRGE
SGTPGPRGLPGVVGPEGKRGKRGLRGPAGNTGPQGERGLQGMRGLPGADGPMGLKGQPGE
RGNVGLPGLKGSSGDPGRAGPQGLPGQRGMMGRPGITGKLGASGERGIPGADGRPGEQGP
QGLQGAPGLMGSPGERGLQGEPGKDGEVGQPGPQGPKGDFGRDGSPGVQGPPGLIGPSGE
RGSAGPTGPTGFPGMPGTAGLPGTPGKEGEPGVAGPPGPTGQVGPRGERGFSGDRGQPGA
PGIPGEKGESGAQGTDGLPGLEGPRGTKGHQGPMGPMGLPGPRGLTGFSGEKGERGSLGP
QGNEGPPGRQGEQGPQGPVGPSGPPGEPAERGEPGTPGVNGEAGAPGSTGERGQPGMQGV
PGLHGPPGLTGMPGLKGDRGYAGAKGQQGSPGSPGKQGEAGQRGPSGPIGAKGARGEVGL
KGEIGRVGLPGRPGDLGPPGPQGSTGPSGIPGIPGAKGAVGDSGRPGPPGSNGLTGPQGP
EGVKGERGSEGEPGMQGPVGPPGVSGERGPTGLPGLTGPPGPQGLRGVQGESGSPGKSGN
DGAPGPIGSPGPQGSPGPMGEPGPEGRPGKMGQPGIPGRIGDKGPMGQSGQPGSSGAPGL
QGPPGPGGPPGPSGERGPRGESGPSGVEGPQGPAGKQGIPGLDGAKGERGEAGADGAKGH
AGIPGLPGIVGAPGRSGDRGLPGPMGPPGKDGDVGSRGPPGRDGSPGLQGGLGPSGARGP
QGEPGKHGSPGPAGPPGPPGPPGEGLAYDAAAIAAMLQQGSMKGPDPMGDDPNIPPRFFK
DDMPLAERKEIVMKAYERLKVSLNKFLKPDGSKEAPAKTCGDIKYHHPEFTSGQYWIDPN
GGDANDAILVHCDLTTGASCVFPKPMQSKDITHQGKNEAWLSEMEDGFTISYKADNSQLT
YLQLLSLHAVQNVTLHCRNTIGYYDPASKNYRHGVKLLAYNDAEILPKANNRLRYKALLD
ECQHKHQDWAKTIVQYETDKPNRLPLLDIAVRDVGRKNQMFRIELGLACFT
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaagcagtaatagcttgcctggctcttttgctggctccagtagtcagtaaggag
ttgtctgatggaagggatgatttcgatgtacctcaagctcaggaggcagacctaattaac
tatgacgattataacccttttggggaagatgagaacgcggtgatagcggagcgagatttt
cggggttctacgacgaatcaacgtgggtatggaagaccgcagcagcaggttgatcgagta
ccaccagtgaaatgccttgacctgggaagatcgtggtctgatggagacacttggaaaaga
gacaactgtactctttgtcagtgttttagtgggagggttaactgttcagtgttgcctgct
tgtctgtctgcgccgagcactagtcgcccgccagtgtttacttcaccgcaaccagccgtt
acagtccgtggggtacaaggcgttccaggcgatgagggccctcctggccctcctgggtca
cctggggtcggtggtatacccggagcgcctggaattccaggagccgtaggacctatgcca
gatgttaacgcctaccttgcccagctagcagcgacggcagtaggagacaaaggtccagcc
ttcgacccttaccattacatgcaagcgtctgttggtgcaccaggaattagaggaatacca
ggtcctcaaggtccgcccggaccgcagggctttcaaggtccccgtggagaaccaggtgaa
tccggatcacccggaccactagggccacctggggaaaggggaccgatcggcgttccggga
aaggatggcttgcctggagaagatggtgagccagggcctccaggggctgctggtcaaact
ggatccagaggatctcctggtgttcccggtattcaaggattgaaggggcataggggattt
gacgggaaggatggcgccaaaggggaccaagggttacccggtgaaaagggtccaacgggg
ttatcaggacagatgggaccagctgggccagtggggccagttggtccacgaggagagcgt
ggtcgtgaaggaccttctggaacgcctggactaaggggagttgatggcgccccaggaaca
cctggtttaataggaaacgttggcaagcctggttctccaggattcccgggttcgcctggc
ttaaagggagaaataggcgtgcaagggcccaaaggcagtcaaggtattcaaggtcctaga
ggtgaacccggtagaccgggtcaatcaggtgaggctggaccaccagggctttctggtaga
gatggtattcctggtgagaaaggaattcagggacaagctggatctgctggtcctcaagga
tttccgggatcaagaggcacccctggtgtagctggtgaccctggtattccaggctcaaaa
ggaatgccaggacaacctggtgaaagaggtctcaaaggagaaataggcataagaggtgaa
tctggaactcctggtccccgaggtctacctggtgtggttgggcctgaaggaaaacgagga
aaaagagggttaaggggaccagcaggtaatactgggcctcaaggagaaagagggctacag
ggtatgcgaggattacctggagcagatggcccgatgggtttaaaaggacaaccaggggag
cgtggaaatgtcggattacctgggcttaaaggtagttccggtgacccgggacgagcaggc
ccacaaggacttccagggcagagaggaatgatgggaagacctggaataactggaaaatta
ggagcatcaggggaaagaggtatacccggcgctgatggacgacctggtgaacaagggccc
caaggtttacaaggagctcctggcttaatgggaagcccaggagaaagaggattgcagggt
gaacctggcaaagacggcgaagttggccagccgggaccacaaggtccaaagggagatttc
ggacgagatggaagcccaggtgttcaaggtcctccaggtctaataggcccatctggtgaa
cgagggtcagcgggaccaacaggccctacaggttttcctggcatgccggggacagctggg
ttaccaggtactcctggtaaagaaggagaacctggagttgccggacctcctggtcctacg
ggtcaagttggtcctcgtggggaaagaggcttttcgggtgatcgaggccagccaggagca
ccaggaataccaggggagaaaggagaaagtggtgcacagggtacagatgggctacctggg
cttgaaggacctcgaggtaccaaaggtcatcagggtccaatgggtcctatggggcttccc
ggacccagagggttgactgggttttcaggagaaaaaggagaacgaggatctcttggccca
caaggcaacgagggacctcctgggcgtcaaggagagcaagggccccaaggtcctgtaggt
ccttctggaccacccggtgaaccagctgaacgaggagaacctggaactcctggtgttaac
ggtgaagcgggggccccaggatcaacgggagaacgaggtcagccaggaatgcagggtgtc
cctggtttgcatggacctccgggtctaactggaatgccgggactaaagggagatagaggt
tatgctggtgcgaaaggtcaacaaggatcaccaggcagcccaggtaaacaaggagaagct
ggacaaagaggaccttcgggcccaataggtgcaaaaggtgcccgaggtgaagtaggtctg
aaaggagaaataggacgagttggacttcctggcagacctggtgatttaggaccaccggga
cctcaaggaagcacaggtccatctggaattcctggtattcctggtgctaagggtgctgtt
ggggattccggtagaccaggtcctccaggatctaatggactaactggaccccaaggacct
gaaggagtgaaaggtgaaagaggtagtgagggcgaacctggaatgcagggtccagttgga
cctccgggagtgagtggagaaagaggtccaactggattacctggtttgactggaccacca
ggacctcaaggattacgtggagttcagggtgaaagtggttctccgggaaaatctggaaat
gatggcgctcctggacctataggcagtcctgggccgcaagggtcacctggacccatgggt
gagccagggcctgagggtcgtcctggtaaaatgggccagccaggtatacccgggcgtata
ggagacaagggtccaatgggacaatctggtcaacccggttcttctggtgcacctggattg
cagggacctcctggaccaggtggcccaccaggtccgagtggagaaagaggtccaagaggg
gaatcaggaccttctggtgttgaaggacctcaaggccctgcaggaaaacaaggaattcct
ggcctagacggagccaaaggtgaaagaggggaagcaggtgcagacggggctaaaggccat
gcgggaatacctggcttaccaggaattgttggtgcgccaggtagatctggggatagaggg
ctaccaggacctatgggtcctcctggaaaggatggtgatgttggatcaagaggtccccct
ggtcgtgatgggagccctggtctacaaggaggcctaggaccgtcaggggctcgtggtcct
caaggagaaccggggaaacacggcagcccaggtccagcgggtccacctggaccgccagga
cctccaggagaagggcttgcatatgatgctgctgcgattgctgcaatgttgcaacaaggt
tcaatgaagggaccagaccctatgggtgatgatccaaatataccaccgcggttcttcaaa
gacgacatgcctcttgctgaaagaaaagaaatcgtcatgaaggcctatgaacgcctgaaa
gtgtcattaaacaaattcttgaagcccgatggttctaaggaagccccggctaagacctgt
ggagatattaagtaccatcaccctgagttcactagcggtcaatattggatcgatcctaat
ggtggtgatgcaaatgacgccatcctggtacactgtgatttgacgactggtgccagttgt
gtcttcccaaaacctatgcaatctaaagacatcacccaccaaggaaagaatgaagcctgg
ctcagcgagatggaagacggattcactatttcctacaaagcagacaacagccaactgacc
tacttgcaacttctatcgttacacgcggtgcaaaatgtgactttacattgccggaatact
atcggatattacgacccggcctctaagaactacagacatggtgttaaacttctcgcttac
aacgacgctgaaatactgcctaaagcaaataatcgtctacggtataaagctttgttggat
gaatgtcagcacaagcatcaagactgggcgaagacaatagtgcaatatgaaacggataaa
cccaatcgcctcccactcttggacatcgcggtcagggatgttggtagaaagaaccaaatg
ttcaggattgagctgggactagcgtgcttcacataa
DBGET
integrated database retrieval system
