Pieris brassicae (large cabbage white): 123712602
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Entry
123712602 CDS
T08632
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pbx
Pieris brassicae (large cabbage white)
Pathway
pbx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123712602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbx03041
]
123712602
Enzymes [BR:
pbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123712602
Spliceosome [BR:
pbx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123712602
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
Flavi_DEAD
AAA_30
nSTAND_NTPase5
T2SSE
SRP54
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123712602
NCBI-ProteinID:
XP_045521744
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Position
7:complement(16601497..16606307)
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AA seq
885 aa
AA seq
DB search
MDQRSKRHYSSSDSDSVEESRLKDLKERDEFATRLRKRDEDKVKKVTESSSKRSYEEAAK
RLKLEAEDRDKLLPKLRIQSRRKYLQKRKDDKVVELEDDIADDEYLFEETILTEREKKER
EHKKTILKLAKEHEKARELENIQRYHMPQDLGKGEKGEYIEVDENEKLPHAEQRKWEQEQ
IKSAFFKFGAKDSKAQDEYELLLDEQIDFIQALQLEGNKEKKEAEEVSEYKKLRMTIEET
KKSLPVFPFRNSLIEAIKNYQILIVEGETGSGKTTQIPQYLHEAGFTNEGKKIGCTQPRR
VAAMSVAARVAQEMNVKLGNEVGYSIRFEDCTSDRTVIKYMTDGTLHREFLSEPDLASYS
VMIIDEAHERTLHTDILFGLVKDITRFRPDLKLLISSATLDAEKFSSFFDEAPIFRIPGR
RFPVDIYYTKAPEADYIDASVVSVLQIHATQPLGDILVFLTGQEEIETCVEMLQERTKRL
GKKLKELVILPVYANLPSDMQAKIFEPTPEGARKVVLATNIAETSLTIDNIIYVIDPGFA
KQNNFNSKTGMESLMVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYKYELEDNTVPEI
QRINLGNAVLTLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKAGRRM
AEFPTDPMLAKMLLASEKYKCSEEIVTIAAMLSVNSSVFYRPKDKIIHADTARKNFFHPS
GDHLTLMNVYNQWVESDFSVQWCYENFIQYRSMKRARDVREQLAGLMDRVEIEMVSSITE
DMNIRKAITAGYFYHIAKFSKGGHYKTVKHNQTVMIHPNSALFEELPRWVIYHELVFTSK
EFMRQVTEIESKWLLDVAPHYYKPKELEDSTNKKMPKTIGKASKT
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggaccagcgtagcaaaaggcattattcttcatcagattctgatagtgtggaagaaagt
cgcttaaaagatttaaaagaaagagatgaatttgctacaagattaagaaaacgagatgaa
gataaagtaaaaaaagttactgagagttcaagtaagaggtcatatgaagaagcagccaaa
cgtcttaaattagaagctgaagatagagataagctattgccaaagcttcgtattcagtcc
cgtagaaaatatttgcaaaaaaggaaagatgataaagttgttgaacttgaagatgatatt
gctgatgatgaatatcttttcgaagaaaccattttaactgaaagagaaaaaaaagagaga
gaacataaaaaaactattttaaaattggcaaaagaacatgagaaagcaagagagttggag
aacattcaaaggtatcatatgcctcaagacctgggtaaaggagaaaaaggtgaatacatt
gaagttgatgaaaatgaaaagctaccacatgcagaacaaagaaaatgggaacaagaacaa
attaagtctgcattctttaaatttggtgcaaaagattctaaagcacaagatgaatatgag
ttgcttcttgatgaacaaattgattttatacaagctctacaacttgaaggcaataaagag
aaaaaggaagctgaggaagtatcagaatacaaaaaattgaggatgactatagaagaaaca
aaaaaatccttacctgttttcccttttcgtaattctctcatagaggcaataaaaaattat
cagattttgatagtcgagggtgaaactggttctggtaaaacaacacaaatacctcaatat
ctccatgaggctggtttcactaacgaaggtaaaaaaattggctgtacacaaccaagaagg
gttgcggcaatgtctgtagctgctagggtagctcaagaaatgaatgttaaacttggaaat
gaagttggttacagcattagatttgaggattgcacttcagatagaacagtaataaaatac
atgacagatggaacactgcatagagaatttctttcggaaccagaccttgcttcatacagt
gttatgataattgatgaagcacatgaacgtactttacatacagatattttatttggatta
gtaaaagatataactagatttagacctgatttgaaactacttatatccagtgccacactt
gatgcagagaaattttcaagcttttttgacgaggcacccatatttagaatacctggtaga
aggtttcctgttgatatttattatactaaggcgccagaagcagattacatagatgctagt
gttgtatcagtgttacagatacatgctacgcagccactaggtgatattcttgtatttctc
actggtcaggaggagattgagacttgtgttgaaatgttacaagaaaggactaagcgtctt
ggaaagaaattaaaagaacttgtaatattacctgtatatgcaaatcttccaagtgatatg
caagcaaaaatatttgaacccacacctgaaggtgcaagaaaagtagttttggctacaaat
atagccgaaacatctcttactatagataatattatttatgttattgacccaggctttgca
aagcaaaataattttaattcaaaaactggaatggagagtcttatggttgtacctatttct
aaggcatctgcaaatcagagagcaggtagggctggtagagtagcacctggaaagtgtttc
agattgtacactgcttgggcttataaatatgagctagaagataacactgttcctgaaatt
cagagaattaatttagggaatgctgttctgacattgaaagcattaggaattaatgactta
atacattttgatttcctggatcccccacctcacgaaacattagtattagctctagaacaa
ctatatgcccttggcgctcttaatcaccatggtgaattaaccaaggcaggaagaagaatg
gcagagtttccaacagatcctatgcttgcgaaaatgcttttagccagtgaaaagtacaaa
tgctccgaagaaatcgttacaatagcagctatgctgtctgttaatagttcagtattctac
agacccaaagacaaaataattcatgctgacacagctagaaaaaacttctttcatccaagt
ggtgaccacttaacactaatgaatgtatataatcaatgggttgagtctgatttttctgta
cagtggtgctatgaaaactttatacagtacagatccatgaagagagctcgggatgtccgt
gaacagcttgctggattgatggacagggtagaaattgaaatggtatctagtattacagaa
gatatgaatattcgtaaagcaataactgcaggatacttttatcatattgcaaagttttct
aaaggagggcattataaaacagtaaaacataatcaaacagttatgatacatcctaatagt
gcactatttgaagagttaccaaggtgggttatatatcatgaacttgtatttacatccaaa
gaatttatgagacaagtaacagaaatagagagcaaatggttacttgatgttgctccacat
tactataaacctaaggaacttgaggattcaacaaacaagaaaatgccaaagacaattggt
aaagcttcaaaaacttaa
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