Pieris brassicae (large cabbage white): 123712726
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Entry
123712726 CDS
T08632
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pbx
Pieris brassicae (large cabbage white)
Pathway
pbx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123712726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbx03400
]
123712726
DNA repair and recombination proteins [BR:
pbx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123712726
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
MLKL_N
RGI1
DUF2452
Motif
Other DBs
NCBI-GeneID:
123712726
NCBI-ProteinID:
XP_045521906
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Position
8:complement(16212105..16236206)
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AA seq
913 aa
AA seq
DB search
MSSLQPIQALNLDSVKQQAFVKYFNSLPEKPPTTVRIFDRNDYYSVHGADATTAAREVFS
SVSNIKKMGIEPNRQDYLVLSKGNFDILIRKLLLVRRYRVEIYASEASSKNEWILKYKGS
PGCMSQLEEVLGEGFTNDNGCLIAVNIKTDAVTRGRLIGVACVSGNDYQMSVSEFTDDDL
LTQLETVTVQMAPTECIIPQAENDDYKALKKVMERANITVTRLKKTDFSTEGLIQDLNRL
LKFKDSQVQDANAFPETRMASAMLSLAAAIRYTSLVNDATNFGRFRLNSIKAECFLHLDA
AALSALNVLPELGDSTHAPTRSLYGLLDRCRTQQGKRLLAQWLRQPLRDINLINERLDIV
ELLVENSQLRLQLHEDHLRRIPDLQALARKLTRKKANLHDCYRIYQAIQRLPNLLQCLSE
SNSSTVHSSLAEPISELNDDLEKFQQMIEATVDMDAVDRGDFLVKPSFDEQLQLLHEQME
NIQLSAEKELNKAARDLDMDAKRTIKLENNPQNGFYFRVTLKEEQALRGNIKYTIIDAVK
GGVRFKTNALERITEDYVQSKIIYEKEQDKTVAEIIGIAAGYSECLFGLSHILSKLDVLV
SFAVAASTAPYPYTRPTITESLDEFVLRDVRHPCLEVQEGVSFIPNDVVFKRDSCLMHIV
TGANMGGKSTWMRSCGIVALLAHAGCLVPASSAKVPKLRALCARVGATDREEKGQSTFML
EMIESAAILRTATPDSLVLVDELGRGTSTYEGCGIAWAIAEKLAQESKCFCLFATHYHEL
TRLPSLHPNVIVNSHAEASVVDSQLLLLHKIVPGPATHSLGLHVAKLADLPESIIEYAEA
KQAELETNLFEIEASVKTQETLEGQQLIEDFLRKCKKIQETVKSDADMMLEINKMKEDLI
SSDNKYIKSLLTA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgcttcaacctattcaagccctaaacctagactccgtcaagcaacaagccttt
gttaaatacttcaattcattacctgagaaacctcccacaactgttcgaatctttgatcgc
aatgactactacagtgtgcatggtgcggatgcaaccaccgctgcgagggaggtattttca
tcagtatccaacatcaagaagatgggaattgaacctaatcggcaagattatctcgtcctc
tcgaaagggaactttgatatattgattcggaagttattgttggtacgtcgttaccgcgtt
gagatctacgcatctgaagcgtcaagtaagaacgaatggatcctcaagtacaaaggatca
ccaggatgcatgtctcaactagaggaggtgttgggcgaaggattcacaaatgataatggt
tgcttaattgccgtcaatatcaagactgatgctgtcactaggggtcgcctcataggagtg
gcgtgtgtatcaggtaatgactaccaaatgtccgtctcggagttcaccgatgacgatttg
ctgacacaactggaaactgttactgtccagatggcgccaactgaatgtataataccgcaa
gccgaaaatgatgattacaaagcgctgaaaaaagtaatggaacgtgccaatataacagtg
acaaggttgaaaaaaaccgatttctctactgaaggcctgatacaggatctaaatcgtctt
ctaaagttcaaggattctcaagtgcaagatgccaatgcctttcccgaaacaagaatggca
tctgccatgttgagcttagccgcagctataagatatacatcacttgttaacgatgctact
aactttggaagatttcgcctgaactccataaaagcagagtgcttcctgcatttggacgcg
gcggcactcagcgcgttgaatgtgttaccggagctgggagactccactcatgcgcctacg
aggagtttgtatggactactcgatagatgtcgcacccaacaaggaaaacggctcttagcc
caatggcttcgtcaacctctcagagatataaaccttattaatgagcggttagatatcgta
gaattgttagtagagaactcacagctcagactacaattgcatgaagatcatttgcgaagg
atcccggatttgcaggccttagccaggaagcttactagaaaaaaggcaaatttacatgac
tgttataggatatatcaggcaatacaaagattgccgaatctactccaatgtttgtcagag
tccaacagttcaactgttcattcttcattggccgaaccgatttccgagttgaatgacgat
ttggaaaagttccagcagatgatagaggctactgtcgatatggatgctgtggacagaggc
gatttcctagtgaaaccatcgtttgacgagcaacttcaattacttcacgaacagatggaa
aatatacagctgtccgccgaaaaagaattgaacaaggctgcaagagacttagatatggac
gccaaaaggactatcaaacttgaaaataatccacaaaatggattttactttagggtaaca
ctaaaagaggaacaagctttacgtggaaacataaaatacactataatagacgcggtcaag
ggtggcgttaggttcaaaactaacgcactagagcgcataacagaagactatgttcaaagt
aaaattatctatgaaaaggaacaagataaaacggtagcggagattattggtattgctgct
ggttattcagaatgtctcttcggtctttctcatattctatcaaagctggatgtgcttgtc
tctttcgcggttgcggcttcaactgccccctacccatacactcggccaaccattacagaa
agcttggatgagttcgtactacgagatgtgagacatccatgtcttgaagtgcaagagggt
gtctctttcataccgaatgatgttgtttttaaacgagattcgtgtttgatgcacatagtg
acaggtgccaatatggggggtaagtcaacgtggatgcggtcttgtggcattgtggcccta
ctggcacacgcgggctgtttggttccggcctctagtgctaaggtgccaaaacttagggcc
ctttgcgcgagagtgggagcgactgatagagaagaaaagggacagagcacttttatgtta
gagatgattgagtcggctgctattttaaggacggcaaccccggactcattagtcctagta
gatgagcttgggcgcggcacatccacttatgagggatgcggcatcgcctgggctattgct
gagaaactagcgcaagaaagcaaatgtttctgcctcttcgcgacacattaccatgagctg
acgcgattgccgagtctccatcccaatgtaatagtgaattcacacgcagaagcctccgta
gtggattcccagttgctacttttgcataaaatcgtccctgggccggcaacacattctcta
ggattgcatgtcgccaaattggccgatttaccggaatctattattgagtatgcagaagcc
aaacaggccgaactcgaaacaaatttatttgaaatcgaggcttcagttaaaactcaagag
actttggagggacaacaattaatcgaagactttctacgaaaatgcaagaaaatacaagaa
actgtcaaatctgacgcggacatgatgctggaaattaataaaatgaaagaagatttaatt
agttctgacaacaaatacataaaatctttacttactgcgtga
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