Pieris brassicae (large cabbage white): 123713041
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Entry
123713041 CDS
T08632
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pbx
Pieris brassicae (large cabbage white)
Pathway
pbx03013
Nucleocytoplasmic transport
pbx03015
mRNA surveillance pathway
pbx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123713041
09122 Translation
03013 Nucleocytoplasmic transport
123713041
03015 mRNA surveillance pathway
123713041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbx03019
]
123713041
03041 Spliceosome [BR:
pbx03041
]
123713041
Enzymes [BR:
pbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123713041
Messenger RNA biogenesis [BR:
pbx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123713041
Spliceosome [BR:
pbx03041
]
Complex C
Other components
EJC/TREX
123713041
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123713041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123713041
NCBI-ProteinID:
XP_045522479
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All DBs
Position
8:complement(12858594..12860152)
Genome browser
AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQADQQTADGASEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMAGVKVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMSQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDENDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacgacgatcttctcgactacgaagacgaagagcaggcagatcagcaaaca
gccgacggagcatccgaagcggcgccaaaaaaagaggttaaagggtcctatgtatctatt
catagctctggcttcagagatttcctgctaaaaccggaaattttacgagctatagtagat
tgcggctttgaacatccgtctgaagtgcaacatgagtgtattccccaggccgttcttggt
atggacatcttgtgccaagcgaaatccggtatgggtaagacggctgtgtttgtattggca
acgctgcaacaactcgaaccatcagagaatcatgtctatgttcttgttatgtgtcacacc
agggaactggcattccagatcagcaaagagtatgaacgtttctcaaaatatatggctgga
gttaaagtgtcagtattttttggtgggatgccaattcaaaaagatgaagaagtgcttaaa
actgcttgccctcatatagttgtgggaactcctggacgaatccttgctttagtcaatagc
aagaagctgaatttaaagcatttgaaacacttcattcttgatgaatgtgataaaatgttg
gagtctcttgacatgagacgagatgttcaggagatatttagaaatactcctcatggaaag
caagttatgatgttttcagctactctaagtaaagagatacgccctgtgtgcaagaaattc
atgcaggatcctatggaagtgtatgttgacgatgaagctaaactgactctgcatggactt
cagcaacattatgtcaaacttaaggagaatgagaagaacaagaaactctttgaattactt
gatgttttagagtttaatcaagtagtgatttttgtaaaatctgtgcaaagatgtattgca
ttagcacagttgctaactgatcaaaatttcccagctattggaattcacagaaacatgtct
caagatgaacgtctctctcgctaccagcaatttaaagacttccagaaaaggatattagtg
gcaacaaatctatttggtcgaggtatggatattgaacgagtaaatatcgtgttcaattat
gacatgcctgaagattctgatacttacctacatagagtggctcgggctggtcgatttggt
acaaaaggcttggcaataactatggtttctgatgaaaatgatgcaaagatccttaatgaa
gttcaagatcgttttgatgttaatatcactgaattaccagaggagatagaactgtcaact
tatatagagggacgataa
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