Pieris brassicae (large cabbage white): 123716696
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Entry
123716696 CDS
T08632
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pbx
Pieris brassicae (large cabbage white)
Pathway
pbx03020
RNA polymerase
pbx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123716696
09124 Replication and repair
03420 Nucleotide excision repair
123716696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbx03021
]
123716696
03400 DNA repair and recombination proteins [BR:
pbx03400
]
123716696
Enzymes [BR:
pbx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123716696
Transcription machinery [BR:
pbx03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123716696
DNA repair and recombination proteins [BR:
pbx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123716696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
123716696
NCBI-ProteinID:
XP_045528509
LinkDB
All DBs
Position
11:6277599..6286857
Genome browser
AA seq
1921 aa
AA seq
DB search
MLQLNTMHCYADDRTGEPLEEGLVVDHSNHSTLNTVKRKDHLLGSSLPERRMSVTEGGIR
FPETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITK
TIKILRCVCFYCSKLLVSPTNPKIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDI
GKEGEEGKKGSGHGGCGHYQPSIRRQGLDLTAEWKHANEDTQEKKIIITAERVWEILKQI
TDEESFILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMFGSAKNQDDLTHKLADIIKANN
ELMRNEQTGAAAHVLADNIRMLQFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEG
RIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRR
GNAQYPGAKYIVRDNGERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMS
MMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITP
QANKPVMGIVQDTLTAVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPTPLWTG
KQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVIVDHGELLMGILCKKSLGAS
AGSLLHICMLELGHETAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYQEIKNTIVK
AKDDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKA
MVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYL
AGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQ
LRYGEDGLAGETVEFQNLPTIKLSNKAFEKKFKFDPTNERYLKRIFNEDIIKELTESGYV
IGDLESEWDQLGKDRSVLREIFPSGESKVVLPCNFKRMIWNVQKIFHINKRSTTDLSPIK
VIQSVRDLLKKCVIVAGEDRLSKQANENATLLFQCLVRSTLCAKLVSEDYRLSTEAFEWL
IGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII
NISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGE
DQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFN
DDNAEKLVLRIRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKV
YMHLPQTEAKKRIVITEQGEFKAIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQ
VLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL
MRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMG
GLGVGLGVGGGMYFGVGTPSMTPLMTPWSNQNTPGYGSSVWSPGPVGSSMTPGPSFSPSG
ASDASGMSPSYSSAWSPQPGSPGSPGAPLSPYASPAGVSPSYSPTSPVYAAPSPSLIPTS
PHYSPTSPSYSPTSPNYSPTSPIFTPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYS
PTSPAYSPTSPSYSPTSPSYSPTSSSYSPTSPSYSPSPAYSPTSPGYSPSSPRYSPNSPV
YTSEAHSYSSSSPNYTPTSPAYSPTNHSYSPTSPNNYSPTSRNYSPSSPKYFSTSPKYSP
TSPSVSGGSPRYSPNSLQYSPTSPQYSPSPAYSPSSPQHSGSSHYSPNYSPSSPNYSSPG
YSPSSSKYSPTSPTFTPTSNNYSPSSPAYSPASGGPSTYSPTSPTSPTYTPTSPNYEEDD
D
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaactcaataccatgcattgctatgcggacgacagaactggggagccgcttgaa
gagggactagtcgtcgaccattcgaaccactctacgttgaatacggtcaagaggaaggat
cacctgctggggagctccctcccagagcgtcgtatgtctgtcacggaagggggcattcgc
ttcccagaaacaatggagggtggacgaccaaaacttggaggtcttatggacccacgacaa
ggggtgatcgatagaacatctagatgtcagacttgtgctggaaatatgactgagtgtcct
ggtcattttgggcacatagatttggccaagccagtattccacataggattcataacgaaa
accataaaaattttgagatgtgtctgtttttattgttccaaacttcttgtcagtccgaca
aatcccaaaattaaagaagtagtaatgaaatctaaagggcaaccacgtaaacgattgact
tatgtttatgacttatgtaaaggaaaaaatatttgtgagggtggtgaagatatggatatt
ggtaaagaaggtgaagagggtaaaaaaggctctggtcatggcggttgtggtcactatcag
ccttcaatcagacgacaaggtctagacctcacagctgaatggaaacatgcaaatgaagat
actcaagagaaaaaaattattataactgcagaacgggtctgggaaatattgaaacaaata
acagatgaagagtcctttatactgggcatggacccaaaatttgctagacctgattggatg
atagtaacagttttacctgttccaccattgtctgttagacctgcggttgtcatgtttggg
tctgccaaaaatcaagatgatttgacccataaactggctgatattattaaagcaaataat
gaactgatgaggaatgaacaaactggtgcagcagctcatgttttagccgacaatattagg
atgttacagttccatgttgccacatttgtagataatgatatgcctggcatgccaaaagct
atgcagaaatctggaaagccacttaaagccattaaagctcgacttaaaggaaaagagggg
agaatcagaggaaatcttatggggaagcgtgtagatttttcagccagaactgtcattaca
ccagatcccaatcttcgtattgatcaagtgggggttccaaggtctatagctcaaaattta
acattcccagaattagtgacaccatttaacattgatagaatgcaggaattagtaaggaga
ggaaacgcgcagtatcctggtgctaaatacatagttcgagacaatggagaacgtattgat
ttgaggttccatcccaaaccttctgaccttcatttacagtatggttataaagttgaacgt
catttgcgtgacgacgatttagttatatttaataggcagccgacacttcacaaaatgagt
atgatgggtcacagagttaaagtcttaccgtggtcaacattccgtatgaatttgagttgt
acttcgccatacaacgccgatttcgatggtgatgaaatgaatttgcatgtaccgcagtca
atggagacacgggctgaagttgaaaacattcatattacacccagacagattataacgcct
caagcaaataaacctgtcatgggtattgtacaggacacactcacagctgttagaaaaatg
actaaacgagacgtgtttctgacaaaagaacaggtaatgaatcttcttatgtttttgcct
acatgggatggcaaaattccccaaccttgcattctgaagccaacaccgctctggactggc
aaacaaatatttaccctgatcattcctggtaatgtgaatatgattagaacacattccaca
catcctgatgaagaagatgacggcccctataaatggatatcgccgggagacacaaaagtt
attgtagaccatggagaactattaatgggtatattgtgtaaaaaatcacttggtgcctcg
gctggatcacttctacatatttgtatgttggagttaggacacgaaacggcaggacggttt
tatggtaatattcaaacagtaatcaacaactggctccttctagaaggtcactcaattggt
attggagatactattgccgatccgcaaacatatcaagaaattaaaaatactattgtgaaa
gccaaagatgatgtaatagaggttatacagaaagcccacaatatggaattggagccgact
ccgggtaataccctgaggcaaaccttcgaaaatcaagtaaatcgtatattgaatgacgct
cgtgataaaactggaggttcagctaaaaaatctctgactgaatacaacaacctcaaagct
atggtggtctctggttcaaaagggtctaacattaacatttctcaggttattgcttgtgtg
ggtcaacagaatgtggaaggtaaacgtattccattcggtttccgtaaaaggacgttgccg
catttcattaaagacgactatggtcccgaatctaggggctttgtagaaaattcatatctt
gctggtttgacaccttcggagttttacttccacgctatgggaggtcgtgagggtctcatt
gatactgctgtaaaaactgctgaaactggatatattcaacggcgtctcataaaggctatg
gagtctgttatggttaattatgatggcactgttagaaattctgttggtcaacttatccag
ttacgttatggagaagatggtttagcgggagaaaccgtcgagttccaaaacctgccaaca
attaagctatcaaataaagcttttgaaaagaagtttaagtttgatcccacaaatgaaaga
tacttgaagagaatcttcaatgaggatatcattaaagaacttacagaatcaggatatgtt
attggagatttagaaagcgagtgggatcaactaggaaaggacagatcggtgttgcgagaa
attttcccaagtggagaatcaaaagttgtgttaccttgtaacttcaagagaatgatttgg
aatgtgcaaaaaattttccatattaataaaagatcaactactgatttaagtccaataaaa
gttattcaatctgtaagagatttattaaagaaatgtgttattgtggctggagaggatcgc
ctttcgaaacaagccaatgaaaatgcaaccttactctttcaatgccttgtgagatcaact
ttgtgcgctaagcttgtatcagaagattatcggctctcaacagaagctttcgagtggttg
ataggagaaatcgaaactcgttttcaacaagctcaagcaaatccaggtgaaatggtagga
gccctagccgcccaatctctgggagaacctgctactcagatgacactgaacaccttccac
tttgctggagtctcctccaaaaacgtaactctcggtgtgcctcgtctaaaagaaattata
aatatatccaagaagcctaaagctccctctctcactgtatttctaactggcggagctgct
cgagatgcagaaaaagctaaaaacgtcttgtgtcgtttggaacacacaactttacgaaaa
gtaacggcaaacactgctatatactacgatccagacccacagaatactgttattggtgaa
gatcaagagtttgtcaatgtttactatgaaatgcctgactttgatcccaccaaaatatct
ccatggctgttgcgtattgagctagaccgtaagagaatgaccgacaagaagcttactatg
gaacaaattgcagaaaaaatcaatgcgggctttggagatgatcttaactgtatattcaat
gacgataatgctgaaaaacttgttcttcgtataagaattatgaacaatgaagagagtaaa
ttccaagacaatgacgaggaaactgttgataagatggaagatgatatgttcctcagatgt
attgaagcaaatatgttgtctgatatgactttacaaggtattgaagcgatagcaaaagtg
tacatgcatttgccacaaactgaagctaagaaacgtatagttattacggaacagggagaa
tttaaggcaattgcggagtggctgttggaaacggatggaacatctttgatgaaagtactt
tccgagcgagatgtagacccgataagaaccttcagtaacgatatctgtgaaatattccaa
gttttaggtatcgaggcagtacgaaaatctgttgaaaaagaaatgaatgctgtattgcag
ttctatggtctatacgtaaactaccgccacttggctttgctttgtgacgtaatgactgct
aaaggtcaccttatggctattactcgtcacggcattaacaggcaagacactggcgcgttg
atgagatgttccttcgaagaaactgtagacgtattgctcgacgctgcaagccacgctgaa
gtagaccctatgagaggcgtttctgagaatattatcatgggacaactgcctagaatggga
acaggatgttttgatttactactggatgctgaaaaatgtaagcacggtatggaaatgggt
ggtttgggcgtaggcttgggagtaggtggcggaatgtacttcggagtcggcacaccatcc
atgactccgcttatgactccttggtcgaaccagaatactcctggctatggtagcagtgtt
tggtctcctggaccggtgggtagcagtatgactccgggtccatcattctcaccatcaggt
gcatctgacgcttcgggtatgtctccttcgtatagcagcgcttggtcgccacaaccaggc
tctcctggttctcctggagccccgttgtcaccttacgcttcgccagccggcgtatctccg
tcgtactctcccacaagtcctgtctatgctgctccgtcccccagtctcatcccaacttcc
ccacactactcacctacaagcccgtcctactctccaacgtcacctaactattccccaacc
tctcctattttcaccccaacttctccaagctattctccaacctcccccggctattcgcct
acatccccatcatattcacctacttcgccgagctactctcctacgtccccgagttactca
cctactagcccggcatattccccaacctctcctagttattcaccaacttcaccgagctac
tcaccaacaagctcgtcctattctccgacgagcccgtcttattcgccgagtccagcttac
tcgccgacttctccgggctactcgccgtcttcaccgagatattctccgaatagtccagtg
tacacttctgaggctcacagttactcctcgtcatcaccaaattacacgcccacatcacca
gcctattcaccaacaaatcattcttattctccgacttcaccaaataactattcaccgaca
tcacgcaattactcgccttcgtcacccaaatatttttcgacttctcccaagtattctccg
acatcgccatccgtatcgggaggcagtcctcggtattcgccgaacagtcttcagtactct
ccaacaagcccgcaatattcaccaagcccggcgtactctccttcgtcgcctcaacattcc
ggaagctcgcattactcaccaaattactcaccgtcttcaccaaactattcatctcctgga
tattctccgtcctcctctaaatattccccaacatcgccaacattcacgccaacctcaaat
aattattcgccatcatccccggcctactctcccgcttccggtggaccatcaacttactct
ccaacttctcctacatccccaacttatacacctacttcacctaattatgaagaagatgat
gattga
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integrated database retrieval system
