Pieris brassicae (large cabbage white): 123716753
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Entry
123716753 CDS
T08632
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pbx
Pieris brassicae (large cabbage white)
Pathway
pbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123716753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbx03019
]
123716753
03041 Spliceosome [BR:
pbx03041
]
123716753
03009 Ribosome biogenesis [BR:
pbx03009
]
123716753
03016 Transfer RNA biogenesis [BR:
pbx03016
]
123716753
Enzymes [BR:
pbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123716753
Messenger RNA biogenesis [BR:
pbx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123716753
Spliceosome [BR:
pbx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123716753
Complex C
U4/U6.U5 tri-SnRNP related factors
123716753
Ribosome biogenesis [BR:
pbx03009
]
Eukaryotic type
Pre-60S particles
Helicases
123716753
Transfer RNA biogenesis [BR:
pbx03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123716753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
123716753
NCBI-ProteinID:
XP_045528599
LinkDB
All DBs
Position
11:complement(8171373..8186761)
Genome browser
AA seq
1030 aa
AA seq
DB search
MSGFNSLFDCFEEPSSNEICLQVPNVDNVETSKDEIIQKKRPHEQVEYANTEVQPEENKK
HKPDEDESDLLADLNLDLANSRIVIHTLETHEGCTHEVAVPPNHEYTPLVPLSGTPVKQY
SFILDPFQKEAIMCIDNMQSVLVSAHTSAGKTVVAEYAIALSLKKKQRVIYTTPIKALSN
QKYREFSEEFIDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHY
MRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPL
QHYIFPAGGDGIHLVVDEKGQFKEGNFNTAMTVLSNAGDAGKGDQRGRRGGFKGGNNTNI
FNIVKMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLSEE
DRKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPAR
TVVFTNCQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKVAPNIVKSMVQG
KADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDIIEKVKTKQKEYDA
LGIEQEHSIASYCALRSQLDLLGAQFRSFITRPEYLKPFLQPGRLVKIKTEKHEYDWGIV
VNFRHKTKGKKGKNENPLTAETVILVDTLLHVKKSSGDDPDTNVPCPPGETGDVEVVPVL
HTLINQISSLRVYYPKDLRPADSRKSVLKTINEVKKRFPDGPPLLNPIKDMKIDEPVFKD
CVDKIKLYEDRLFAHPLHKDKNRGALTAAYEKKQEIYDELKQAKGELKKAKSILQMDDLK
KRKRVLRRMGYCTMSDVIELKGRIACELSSADELLLTELIFNGVFNSLTPEQCAALVSCF
VCDENSTQASATGEELKGVLRQLQEYARRIAKISIEAHMDLVEDEYVGKFKCTIMDVVLA
WAKGANFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAINIGNVDLENKFSEAIKMLKR
DIVFAASLYM
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcttcaactctttatttgactgtttcgaagagccatcttctaatgaaatatgc
ttacaagttcctaatgttgacaatgtggagacatcaaaagatgaaataatccaaaaaaag
agacctcacgaacaagtggaatatgctaatacagaagttcaaccagaggaaaataagaaa
cataaacctgatgaagacgagagtgatttattagcagatctgaacttagatttagctaat
tctcgaatagtcattcacacgcttgaaacacatgaaggttgcactcatgaagtggcagtg
cctccaaatcatgaatatacacccctggttccattatctggtactcccgtaaaacagtat
agtttcatattggatccattccaaaaggaagctattatgtgcattgacaatatgcagtcg
gtacttgtttctgcacacacatcagctggaaaaacagttgttgctgagtatgccatagca
ttatccctgaagaaaaaacaaagagttatatacacaacacccataaaagctttatcaaat
cagaaatacagagagttttcagaggaatttattgatgttggtttaattactggagatgtt
actattaatcctactgcgtcctgtcttattatgactactgagattttgaggaatatgtta
tacagaggatcagaaatcatgcgtgaggttggttgggttgtgtttgatgaaatacactac
atgagggataaagaaagaggtgttgtgtgggaagaaactttgattcttctccccgacaat
gttcactacgtgtttctatctgctactatccccaacgcacgacaattcgcggaatgggtg
tgtcgtctccattcgcagccctgtcacgtggtctataccgaatatcggcccaccccttta
caacattatatattcccggctggtggtgacggaatccacctagttgttgatgagaagggt
caattcaaagaaggcaatttcaacacagccatgacagttctaagtaacgccggagatgcg
ggtaagggtgaccagcgcgggcgtcgcggaggcttcaaagggggaaataatacgaatatt
tttaatatcgtcaagatgataatggagaggaactttgccccagtaatcatattcagcttc
agtaagaaggattgtgagctgtatgcgatgcaaatggctaaattggactttaataccatt
gaagaaaagaagctggtcgatgaggtatttaataatgcaatggatgtgctatctgaggag
gacaggaaactgccgcaagttgagaatgtcattccgttactgagacgaggtattggaata
catcatggtggtctactacccatccttaaggagaccattgaaattctttttggattagga
cttattaaggcactatttgctacagagaccttcgcaatgggcctcaacatgccggcgagg
accgttgttttcaccaattgtcagaaattcgatggcaaagatttcagatttatcacatcg
ggcgagtatattcaaatgtctggacgtgctgggcgtcgaggattggacgacaaggggatt
gttattttaatgattgaccaaaaagttgctcctaacatagtgaagtccatggttcagggt
aaagctgatcctattaattcggccttccacctaacttataatatggtgttaaatctattg
cgagtggaagaaataaatcccgaatatatgttggagagaagtttcttccagtttcaaaac
caggccgctattccagacattatagagaaggttaaaacaaaacagaaagaatatgatgcg
ttgggcatagagcaagaacactctatagcttcgtattgtgctctacgttcacaattagac
cttttgggagctcaattccgctcttttattacacgtcctgaatatcttaagccattccta
cagcccggacgacttgttaagataaaaacagaaaaacacgaatatgactggggaattgta
gtaaacttcaggcacaagacaaaagggaaaaaggggaaaaatgagaatcccttaaccgct
gaaactgttatattagtagatacgctgttacatgtgaagaaatcaagtggagacgatcca
gacactaatgtaccatgtcctcctggtgagacgggagatgtggaagtcgttccagtacta
cacactttgattaatcaaataagctcgctgagagtctattatccgaaagatcttaggccg
gcggatagtcggaaatccgtactgaagacaattaatgaagtgaaaaaacgtttccctgac
ggaccacctttgttaaatccaataaaggatatgaaaattgacgaaccggtgttcaaggac
tgtgtggataaaatcaaattgtatgaagacaggttatttgctcatcctttacacaaagac
aagaatcgaggagcgctaacagccgcctatgaaaagaaacaagaaatatatgacgaactg
aagcaagcgaaaggtgaacttaaaaaagcgaaaagtattttacaaatggacgatttaaag
aaacgtaaacgtgttctcagaagaatgggatattgtacaatgtctgatgttatcgaactc
aaaggacgaattgcctgtgagctcagtagtgctgacgagctgttactaacagagttaata
tttaacggagttttcaactcattgacaccagagcaatgtgcagctcttgtaagctgtttt
gtttgtgacgagaattcgacgcaggcttctgccactggtgaggagttgaaaggtgtttta
aggcaattacaggaatatgctagaagaattgcaaagatatcaatagaagcccatatggat
ttagtagaagatgagtatgtaggtaaattcaaatgtacgatcatggatgtcgtactcgct
tgggccaaaggcgctaatttcctgcaaatatgcaagatgacagatgtttttgaaggttca
ataatccggtgcatgcgtcgcctagaagaggtattacgtcagttatgccaagcggccata
aatattggtaacgttgacttggagaacaaattcagtgaagccattaaaatgctgaaacga
gacattgttttcgccgccagtctttacatgtag
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