Pieris brassicae (large cabbage white): 123719863
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Entry
123719863 CDS
T08632
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pbx
Pieris brassicae (large cabbage white)
Pathway
pbx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123719863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbx03019
]
123719863
Enzymes [BR:
pbx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
123719863
Messenger RNA biogenesis [BR:
pbx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123719863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
MMR_HSR1
AAA_21
AAA_25
AAA_10
RsgA_GTPase
AAA_24
AAA_16
Motif
Other DBs
NCBI-GeneID:
123719863
NCBI-ProteinID:
XP_045532184
LinkDB
All DBs
Position
2:1176829..1182447
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AA seq
420 aa
AA seq
DB search
MTEVQLQEFKLEPDSELRFEVESKNEKVVLEVKSGYAELFGTELVKNKPYEFHTGAKVAV
FTWHGCTVELRGRTEVSYVAKETPMVVYLNVHAALEQQRVAAEQDSTRGPVTMVVGPGDV
GKSTLTRILLNYAVRMARRPIYVDLDVGQGQISVPGTIGALLVERPASIEEGFSQQAPLV
YHFGHKSPDENLELYNTIVSRLAEVIAERCEHNKKASTSGVIINTCGWVKGAGYKVLTHA
AQAFEVDVILVLDNERLYNELKRDMPKFVKVVYLPKSGGVVERSTSQRAEIRDSRIREYF
YGKRTPYYPHSFDVKFSDLKIYKVGAPSLPDSCMPLGMRAEEALTKLVPVWASPALAHRL
LAVSFSPAADELALHSNLAGFVCVTAVDSERQTMTILSPQPRPLPNTILLLSELQYMDNH
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagttcagttacaagagttcaaacttgaaccagattctgaacttcgttttgaa
gtagaatcgaaaaacgaaaaagttgttttagaggttaagagcggttatgcagagttgttt
ggaacagaactagttaaaaacaagccatatgagtttcatactggagctaaagtagctgtt
tttacgtggcatggttgtactgtggagctccggggtcggactgaagtcagttatgttgct
aaggagacacctatggttgtttacttaaatgttcatgctgcattagagcagcagcgtgta
gctgcagaacaagatagcacaaggggtccagttacaatggtagtaggtcccggggatgtc
ggaaaatctaccttaacaaggatattgcttaattacgctgtaaggatggcacggagacca
atatatgttgatcttgatgttggtcagggtcaaattagtgtaccaggaactattggagcc
ttactggttgaaaggccagcatctattgaagaaggttttagccaacaagcacctctagta
tatcactttggtcataaaagtcctgatgagaatttagagttgtataacactattgtctct
cggcttgctgaagttatagctgaaaggtgtgaacataataaaaaagcatcaacttcagga
gtaataattaacacatgtggctgggtgaaaggcgctggctacaaagtactgactcatgct
gcccaagcatttgaggtggatgtaatactagtattagataatgaacggttatacaatgaa
ttaaagagggatatgccgaagtttgtcaaagttgtgtatttaccaaaaagtggtggggta
gtggaaagatcaacatctcaacgcgccgaaataagggatagtcgaattcgggagtatttc
tatgggaaacgaaccccatactacccacattcgtttgacgtaaagttttcagatcttaaa
atttacaaggttggggccccgtcacttccggactcgtgtatgcctctgggaatgcgcgca
gaagaagctctaactaagttagtgcctgtttgggcttcacctgcgcttgcgcatcgctta
ctcgcagtgtctttctcaccagcagccgatgaattggcattgcattcgaacctcgcggga
tttgtgtgtgttactgcagtggattcggagagacaaacaatgacaatactgtcaccacag
ccaaggccacttcccaatacgatattattactttcggaactacaatatatggataatcat
taa
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