Segatella bryantii: L6471_04400
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Entry
L6471_04400 CDS
T08221
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pby
Segatella bryantii
Pathway
pby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L6471_04400 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pby03019
]
L6471_04400 (rnr)
03016 Transfer RNA biogenesis [BR:
pby03016
]
L6471_04400 (rnr)
Enzymes [BR:
pby01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L6471_04400 (rnr)
Messenger RNA biogenesis [BR:
pby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L6471_04400 (rnr)
Transfer RNA biogenesis [BR:
pby03016
]
Prokaryotic type
tRNA degradation factors
L6471_04400 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
OB_Dis3
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
UKK76311
LinkDB
All DBs
Position
1:complement(40322..42538)
Genome browser
AA seq
738 aa
AA seq
DB search
MGKGKKGGKRLTKKQLTEKLLNLFQSHPDEVLSFKDIFHMLHLDTHPLKMLAIDVMEEMA
WDDYLMKIADNKYQLNTKGQLLEGTFIRKTNGKNAVKPDNDETPIFVSERNSMFALNGDR
VRVALLARRKNHIREAQVLEILEHSKNTIVGRLHVGKDLAYLVTPNNIYSHDIIIPKRKL
KGGKTDDKAIVKITQWPSAEHKDMLGEVVDILGATGDNDVEMNTILAQYGLPYIYPKNVE
EAANQITGEITEKDLAEREDFRDVFTCTIDPKDAKDFDDALSFKELDKGLYQVGVHIADV
SHYVKEGSVIDKEAYKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFNLDDE
ANIKAYRIVHTVIKSNRRYAYEEVQQILEYNGVIDGTGEPAPKAPKDGYKGENATILIML
DRLAKKLRANRFKNGSVKFDREELHFDVDEKGKPTRCYFKRSHDANKLIEEFMLLANKTV
AESIGKVARAKKAKVLPYRVHDNPDPTKLETLREFVVKFGYKLKSTSTKGATARSLNKLM
EEVSKKPESNMIQMVALRAMMKAKYSVHNIGHFGLAFDYYTHFTSPIRRYPDTLVHRLLT
RYAEGGRSVNEKRYEELCEHCSEMELVAQSAERDSIKYKMVEFMGDKLGEVYDAHISGIT
SFGIYAEIDENHCEGMVPMRDLQDDYYDFDERNFCLIGRRRHHKYQLGDAIKIQVARTDL
EKKQLDFTIYDENKKNKR
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagggtaaaaaaggaggcaagcgcctcacgaagaaacaattgacagagaaattg
ctcaatcttttccaatcgcatcctgacgaggtactttctttcaaagatattttccacatg
cttcacttggacacccatccgttgaagatgctggctatcgacgtgatggaagaaatggct
tgggatgattatttgatgaagattgcggataacaaataccagctcaataccaagggacag
ttacttgaaggtactttcattcgtaaaacaaatggaaagaacgctgtaaagccagataat
gacgagactccaattttcgtatcagaacgaaattcgatgttcgcccttaatggcgaccgt
gtacgtgtagctttattggctcgccgcaaaaatcatattcgagaagcacaagtactcgaa
attctcgagcacagtaagaatactattgtaggacgtcttcatgtgggcaaggatttggca
tatttggttacaccgaataatatctattcacacgatatcattatccctaaacgtaaattg
aaaggaggtaaaaccgatgataaggctatagtaaagattacacagtggcctagcgccgaa
cataaagatatgttgggcgaagtcgttgatatattaggtgctacaggtgacaatgatgtc
gaaatgaatactattctagctcaatatggcctaccatacatttatccaaagaatgtagag
gaagcagctaatcagattactggtgagattaccgagaaagatttggctgagcgtgaagac
tttcgagatgttttcacttgtaccatcgaccccaaggatgctaaggacttcgacgacgct
ttgtcgttcaaggagttggataaaggtctctatcaggtgggggttcacattgccgatgta
tcacactacgtcaaagagggttcggttatcgataaggaagcttataagcgtgctaccagt
gtatacttggtagatcgtactattccgatgttgcccgaacgtctttgcaattttatctgt
tcacttcgtccagacgaagaaaaactggcttatagtgtcatctttaatctcgatgacgaa
gcaaatatcaaggcatatcgtatagttcatactgttatcaagagtaatcgtcgctatgct
tacgaagaggttcaacaaattctcgaatacaatggagtgatagatggtactggcgaacct
gctccaaaagctccgaaagatggttacaaaggcgagaatgctaccattcttatcatgctc
gaccgtttggctaagaaacttcgcgccaaccgattcaagaatggtagtgtaaaattcgat
cgcgaggaactccactttgatgtagacgaaaagggcaaacctactcgttgttattttaaa
cgtagccacgatgccaataaactgattgaggagttcatgcttctagccaataagactgtt
gctgagagtattggcaaggtcgctcgtgccaaaaaagcaaaggtacttccttatcgtgta
cacgacaatccagatcctactaaattagaaaccttacgcgaattcgtggtcaaatttggc
tacaaactcaaaagcaccagtaccaagggagctacagctcgcagtttaaataaattgatg
gaggaagtgagcaagaagcctgagtctaacatgattcagatggtagcccttcgtgctatg
atgaaggcgaagtatagcgtacataatatcggtcacttcggtttggcatttgattactat
acccacttcacttcgccaattcgacgttatcctgatactttggtacaccgtctgctcact
cgttatgccgaaggcggaagaagtgttaacgagaagcgttacgaggaactttgcgagcac
tgttctgaaatggagctagtagctcaaagtgcagagcgcgattctatcaaatacaagatg
gttgaatttatgggcgacaaattgggagaggtttacgatgctcatatcagtggtatcacc
agcttcggtatttatgcagaaatcgatgaaaaccattgcgaaggtatggtacctatgcgc
gatttacaagatgactattatgacttcgatgagcgcaacttctgtctcattggacgtcgc
cgtcatcacaaatatcagttaggagatgctatcaagattcaggtagcccgtactgattta
gagaaaaagcagctcgactttaccatctacgatgaaaacaagaagaataagagataa
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