Segatella bryantii: L6471_10915
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Entry
L6471_10915 CDS
T08221
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pby
Segatella bryantii
Pathway
pby03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L6471_10915 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pby03400
]
L6471_10915 (mfd)
Enzymes [BR:
pby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L6471_10915 (mfd)
DNA repair and recombination proteins [BR:
pby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L6471_10915 (mfd)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UKK75694
LinkDB
All DBs
Position
1:complement(1625669..1629121)
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AA seq
1150 aa
AA seq
DB search
MSIQELQKLYGRLPQASALVDLFKKKSIKSLFLEGLVASSVPLLFSSIASRLKRTVVFVL
DDNDEAGYFYHDLTQIMGQEQVLFFPSSYRRAVKYGQRDSGNEILRTEVLAKLSASSADA
FFVVSYPEAIAELVVSKKRLDDHIIKLKAGQTCVLSELEQQLRSFGFEENDYVYEPGQFA
VRGSIIDVYSYSCEYPFRIDFFGNEIDTIRTFEVEDQLSKDRKTEIEIVPELAQSQTEKV
SFLKFLPEDSILVMKNLSYVHDTIDNTYQEGFSSQAMTERMEGATEQEQAQIIRDMQKDN
NLVTASTFLRDVVAFQRVEFGPNAAEVMRRQDADAQEVSSRATLQFHTTPQLLTHKNFDL
LVQNLEDYILKGYHIYILADSAKQTQRLKDIFADMDNPRAKSIVFEPVDKTIHSGFADDD
LKMCFFTDHQIFDRFHKYNLRSDAARAGKMALTMKELQEMEPGDFIVHVDLGIGKFGGLV
RVPVGNSYQEMIRIIYKNNDKVDVSIHSLYKISKYRSSETGEPPRLSTLGTGAWDRMKEK
AKKKIKDIARDLIKLYAKRKREKGFAYSKDGYMQHELEASFLYEDTPDQSKATQEVKADM
EKDRPMDRLVCGDVGFGKTEVAMRAAFKAACDGKQVAVLVPTTVLAYQHYQSFKKRLEGF
PVTIEYLSRARSAKATKAVLENLEAGKVDIIIGTHKLIGKNVKWHDLGLLIIDEEQKFGV
STKEKLRKIKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELTTYGHE
VIADAINFEMSRNGQVYFVNNRISNLQEIANLIHKYVPDARIAIGHGQMKPDELEEILMG
FMNYDYDVLLSTTIVANGIDISNANTIIINEAHHFGLSDLHQMRGRVGRSNRKAFCYLLA
PPKSVLSVDARRRLEALETFSELGSGFNLAMQDLDIRGAGNLLGSEQSGFMADLGYETYQ
KILNQAITELKNDEFQDLYSDEIAGGNDKISGDDFVDDCALESDLEMYFPDNYVPGSSER
MLLYRELDRIEDDLALEEYKKRLIDRFGPVPHEGEELMQVVRLRRLGKHLGCEKIILKQG
MMQLQFVSNTQSAYYKSMSFDRVLNYVASNPRKCHFKEIKGKRMMMIDKVNSIGQATGLL
ESIDQADAKK
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaatacaagaattacaaaaactttatggcagactgccccaggcgtctgccttagtt
gatttatttaagaagaagtcgatcaagtcactttttctagagggccttgttgcttcttct
gttccgcttcttttttcatcaattgcgtcaagactgaagcgtacggtggtgttcgtactt
gatgataatgatgaggctggttatttctatcacgatcttactcagattatggggcaggag
caggtgttgttctttccttcaagttatcgtcgtgctgtcaaatatggacaacgtgatagc
ggtaatgaaattttgcgaacggaagttctcgccaagttaagtgcttcttctgctgatgct
ttttttgtcgtttcatacccagaggcaatagcagaactggtcgtttcaaaaaagcggttg
gatgatcatatcataaaacttaaagcagggcagacgtgtgtattgtctgagcttgagcag
caattgagatcattcggatttgaggaaaatgattatgtatatgagcctggtcagttcgct
gtgcgaggcagtattatagatgtctattcatatagttgcgagtatccatttcgtatagac
ttctttggtaatgaaatagataccatacgtactttcgaggtggaagatcagttgtctaaa
gacagaaaaactgaaatcgaaattgtaccggaactagcccaatcgcaaacggaaaaagtt
tcgtttctcaaattccttccagaggatagtattctggttatgaaaaatctatcgtatgtg
catgatacaatagataatacttatcaagaaggtttttcttctcaggccatgacagagcgt
atggagggggcaacagaacaagaacaagcccaaattatacgtgatatgcaaaaggataat
aatctggtcacggctagtactttcctgagagatgtcgtagcgtttcagcgtgtagaattc
gggcccaatgcagcagaggtaatgaggcgtcaggatgctgatgctcaagaagtatcttct
agagcaactctacagtttcatactacaccccaacttttgacccataaaaactttgacctg
cttgttcaaaatttggaagactatattcttaagggatatcatatctatattctcgctgat
agtgccaaacagacgcagcgtttgaaggatattttcgcagatatggataatcctcgagct
aagagtattgtctttgaaccggttgataagacgatacattcggggttcgctgatgacgat
cttaagatgtgtttctttactgaccatcagattttcgatcgcttccataaatataacctt
aggagtgatgctgctcgtgccggtaaaatggccctgacgatgaaggagctacaggaaatg
gagccaggtgactttatcgtgcatgtcgatttgggtataggtaagtttggcggtctcgtt
cgtgttccggtaggtaatagctatcaggagatgattcgtattatctacaaaaataatgat
aaagtagatgtttctattcatagtctatacaaaataagcaagtatcgaagtagtgaaacg
ggtgagccgccacgtctttcaaccctcggaacaggtgcttgggataggatgaaggagaag
gcaaagaagaagatcaaggatattgcccgagaccttatcaaactctatgctaagcgtaaa
cgtgaaaaaggctttgcttattctaaggatggctatatgcaacatgagttggaggcgagt
ttcctttatgaggatacgccagaccagtctaaggccacgcaagaagtaaaggctgatatg
gaaaaggatcgtccgatggacagacttgtctgtggcgatgtcggttttggcaagactgaa
gttgctatgcgagcagctttcaaggctgcgtgcgatggtaagcaggtagctgtgttggtt
cctactacagtattggcttatcagcattatcagtcgtttaaaaagcgtttggaaggtttt
ccggttaccattgagtatctttcaagagcacggtctgcgaaagctaccaaggccgtactg
gaaaatctggaggcgggtaaggttgatattatcatcggtactcataaactgataggtaag
aatgttaagtggcacgatttaggactgttaattatcgatgaagaacagaagtttggtgta
tcaacaaaagaaaaacttcgtaaaatcaaaacgaatgttgatacgttgacgatgtcggcg
acaccaatacctcgtacgttgcagttctcattgatgggggctcgcgatatgagcatcatg
cgcactccaccaccaaaccgatatcctattcataccgaattgacgacttatggtcatgag
gttatagcagatgctatcaatttcgaaatgagtagaaatggacaggtctatttcgtcaat
aatcgtatcagcaatttgcaggaaatagccaatcttatccataaatatgtgccagatgct
cgaatagcaataggtcatggacaaatgaaacccgatgaactggaagaaatcttgatgggt
ttcatgaattatgattatgatgttttgctttcaaccactatcgtggctaacggtatcgat
atttccaatgccaatacgattatcattaatgaggctcatcatttcggtttatctgatttg
catcagatgagaggtcgtgtaggtagaagtaaccgaaaagctttctgttatctgcttgcc
ccacctaagagtgtactgagtgtagatgctcgtcgtcgattggaggcactggaaacattc
tctgaattaggtagtggtttcaatttagctatgcaagatcttgatatccgtggtgcaggt
aatttgttaggttctgagcaaagcggatttatggctgatttaggttatgaaacttatcag
aagattttgaaccaggctattacagagttgaagaatgatgaatttcaggacctgtattct
gatgagatagcaggtggcaatgataagatatcgggagatgatttcgtagacgactgtgca
ttggaaagtgatctggaaatgtatttcccagataattatgttccaggaagtagtgaacgt
atgctcttgtatcgtgaactggataggatagaggatgatctggctttggaagaatataag
aagcgcttaatagaccgtttcggtcctgttcctcatgaaggtgaagagctcatgcaagtg
gtacgtttgcgtagacttggtaagcacttaggatgcgagaagattatcctaaaacagggt
atgatgcaattacagtttgtttcgaatacgcaaagtgcttactacaagagtatgagtttt
gatcgagtactcaattatgtagcttctaatccaagaaagtgtcacttcaaggagataaaa
ggtaagcgcatgatgatgattgataaggtaaatagcataggtcaagccacaggattgttg
gaaagtattgatcaagcggatgcgaaaaagtaa
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