KEGG   Segatella bryantii: L6471_13025
Entry
L6471_13025       CDS       T08221                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pby  Segatella bryantii
Pathway
pby03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pby00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    L6471_13025 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pby03021]
    L6471_13025 (rpoC)
   03400 DNA repair and recombination proteins [BR:pby03400]
    L6471_13025 (rpoC)
Enzymes [BR:pby01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     L6471_13025 (rpoC)
Transcription machinery [BR:pby03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     L6471_13025 (rpoC)
DNA repair and recombination proteins [BR:pby03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      L6471_13025 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Biotin_lipoyl_2 SSrecog
Other DBs
NCBI-ProteinID: UKK76090
LinkDB
Position
1:complement(2109128..2113462)
AA seq 1444 aa
MAFKKETKVKNNFTKITIGLASPEEILENSYGEVTKPETINYRTYKPERDGLFCERIFGP
TKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERCGHIELVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDAVIYYEKYIVVKPGVMEGKKDADGVELNGSHKMDLLSEEEYIDIIDNQ
IDPNNDRLADDDPNKFVAKMGAEAIYDLLTDIDLDGLSYQLRDMANNDSSQQRKTEALKR
LQVVEAFRTSKGINRPEWMIMKIIPVTPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNR
LKRLVEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSESNRPLKSLSDSLKGKQGRF
RQNLLGKRVDYSARSVIVVGPELNMGECGLPKLMAAELYKPFIIRKLIERGIVKTVKSAK
KIVDRREPVIWDILENVMKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFN
ADFDGDQMAVHLPLSNEAVLEAQILMLESHNILNPANGAPITVPAQDMVLGLYYITKLRP
GAKGEGLTFYGPEEAIVASNEGKCDLHAIVKVVVDDIVDGKHVKHMVETSAGRVIVNQIV
PDEVGYFNDIISKKTLRGIIADVIGAVGMARACSFLDGIKNLGYRMSYEAGLSFNLDDII
IPEEKVAIVEKGNKEVEEITNNYNMGFITDTERYNQVIDTWTHVNNDLGNILMKEMREAD
QGFNAVYMMLDSGARGSKDQIKQLSGMRGLMAKPQKAGAEGAQIIENPILSNFKEGMSVL
EYFISSHGARKGLADTAMKTADAGYLTRRLVDVAHDVIITEEDCGTLRGLVCSALKNGDE
IISTLYERVLGRVSVHDVVDPTTGNLIVAAGEEITEPKAKAIENSPIESVEIRSVLTCES
KHGVCMKCYGRNLATARMVQLGEAVGVIAAQAIGEPGTQLTLRTFHAGGIAANAAANANI
TAKNDAKLEFDELRVVPFVEEDEEGNDINCQMVVSRLAEVRFVDPNTGIVLSSLNVPYGA
SLYKKHGDVVKKGDVICKWDPFNAVIVSEYAGVLKFNDVVEGQTYRAETDETTGLTEKII
TDSKNRSLVPTCDVVDAEGNVVGTYNFPVGGHVVVEDGQTISTGTTLVKIPRAVGGAGDI
TGGLPRVTELFEARNPSNPAIVSEIDGEVTMGKVKRGNREIIVTSKTGDQKKYLVPLSKQ
ILVQEHDAVRAGTPLSDGVTTPGDILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEI
IVRQMMRKVRIDDPGDTTFLEQELVDKLDFADENDRIWGKKVVTDAGDSELLKPGQIVTV
RKLRDENSSLKRRDLKLVQVRDAVPATSTQILQGITRAALGTKSFMSAASFQETTKVLCE
AAIRGKSDYLEGMKENVICGHLIPAGTGLRQWQKLVVGSKEEYERIQANRKNVLDFADNN
VATE
NT seq 4335 nt   +upstreamnt  +downstreamnt
atggcttttaaaaaagagacaaaagtaaaaaataattttacgaaaattaccataggttta
gcttctcctgaagaaatcttggaaaattcgtatggcgaggttactaaaccagaaaccatt
aactatcgtacatataagcctgaacgagatggtcttttctgcgagcgtatttttggtcct
actaaggattatgagtgtgcttgtggtaagtataagcgtattcgttataaaggcattgtt
tgtgatcgttgtggtgtagaagttacagaaaagaaggttcgtcgtgagcgttgtggtcat
atcgaacttgtagtacctgttgctcatatttggtatttccgttctttgccaaataagata
ggttaccttctgggtttaccaacaaagaagcttgacgctgttatctactatgagaagtat
atcgttgtcaagccaggtgttatggaaggtaaaaaagatgccgatggtgtcgaattaaat
ggttctcataaaatggacctcctcagtgaagaggaatatatcgatattatcgataatcaa
atagatcctaataatgatcgtttggctgatgatgacccaaataagtttgttgctaaaatg
ggtgcagaagctatttatgatctcctgacagatatcgatcttgatggtctttcttaccag
cttcgcgacatggctaataatgattctagtcagcagcgtaagacagaagcattgaagcgt
cttcaggttgtagaagctttccgtaccagcaagggtattaacagacctgagtggatgatc
atgaagattattcctgttactccaccagaacttcgtccattggttccacttgatggtggt
cgttttgcaacttctgacttgaatgatctttatcgtcgtgttattattcgtaataaccgt
ttgaagagacttgtagaaatcaaggctccggaagtcattttacgtaacgaaaaacgtatg
cttcaggaggctgtggacagtttatttgataattctcgtaagagctcagctgttaagagt
gaaagtaatcgtcctttgaagtctttgtctgactctttgaaaggtaagcagggacgtttc
cgtcagaatttgttgggtaagcgtgttgactattctgctcgttctgtaatcgttgtaggt
cctgagctgaatatgggtgaatgcggtcttcctaagttgatggctgctgagctatataaa
ccatttatcattcgcaagcttattgagcgtggtatagtaaaaactgtaaagagcgctaag
aagattgttgaccgtcgtgaaccagttatttgggatatccttgaaaatgtaatgaagggt
caccctgttatgcttaaccgtgctccgacacttcaccgtttgggtattcaggctttccag
ccaaaattgatagagggtaaagcaattcagttacatccattggcttgtactgcatttaat
gcagacttcgatggtgaccagatggctgttcaccttcctttgagtaatgaagctgtattg
gaagctcagattttgatgcttgagagccacaatatccttaaccctgctaatggtgctcct
atcaccgtacctgcacaggatatggtgcttggtttgtattatattactaaattgcgtcct
ggtgctaagggtgaaggcttgactttctatggtcctgaagaggcaattgttgcaagtaat
gagggaaagtgtgatttacatgcgattgtaaaggttgtagtagacgatattgttgatggc
aagcatgttaaacatatggttgaaacatcagcaggtcgtgttattgtaaaccaaattgtc
cctgatgaggttggttacttcaatgatattatctctaagaaaactcttcgtggtatcatt
gctgatgtgattggtgctgtcggtatggcacgtgcatgtagcttcttggatggtatcaag
aatttgggttatcgtatgtcttatgaggctggtctttccttcaatcttgatgatattatc
attccagaagaaaaggtcgctatcgtagaaaagggtaataaggaagttgaggaaattacc
aataattataatatgggtttcatcacagataccgaacgttataatcaggtaattgataca
tggactcacgtaaataatgacttgggtaacattctgatgaaggagatgcgcgaggcagat
cagggtttcaatgctgtttatatgatgcttgattctggtgctcgtggttctaaagatcag
attaagcagctgtctggtatgcgtggtttgatggcaaaacctcaaaaagcaggtgcagaa
ggtgctcaaattattgaaaacccaattttgtcaaactttaaagagggtatgtctgtgttg
gaatactttatttcttcacatggtgctcgtaagggtttggctgatactgctatgaaaact
gcagatgctggttatttgactagacgtttggttgacgtagctcatgatgttattattact
gaagaagattgtggtacattaagaggcctagtttgctcggctttgaagaatggtgatgaa
atcatttcaacgttgtatgagcgtgttcttggtcgtgtatctgtacatgatgttgtagat
ccaactacaggtaatcttatagttgctgctggtgaagaaattactgagcctaaggccaaa
gctattgaaaattcgccaatcgaaagtgtagagatacgttctgtacttacttgtgaaagt
aagcatggtgtttgtatgaagtgttatggtcgtaacttggctacagctagaatggtacag
ctgggtgaagctgtgggcgttatcgcagctcaggctattggtgaacctggtacacagttg
actcttcgtacattccacgctggtggtattgctgctaacgctgctgctaatgctaatatt
acggcaaagaatgatgcaaaactagaattcgatgaacttcgtgttgttccttttgtagag
gaagatgaggaaggtaatgatattaattgtcagatggtagtaagccgtttggctgaggtt
cgttttgtagatcctaatacaggtattgttctttctagcttgaatgttccttatggtgct
tctttgtataaaaagcacggagatgtagttaagaaaggtgatgttatctgtaaatgggac
ccatttaacgccgttatcgtatctgaatatgctggtgttctgaagtttaatgatgttgtt
gaaggtcagacttatcgtgcagagaccgatgaaacaacaggcttgactgaaaagatcatt
actgattctaaaaatagatctttggttcctacatgtgatgtagttgatgctgaaggtaat
gtagtaggtacatataacttccctgtaggtggtcacgttgttgttgaagatggtcagacc
attagtacaggtacaacattggttaaaatacctcgtgctgttggtggtgctggtgatatt
accggtggtcttcctcgtgtaaccgagttgtttgaggcacgtaatccttctaatcctgct
attgtttctgaaattgatggtgaggttactatgggtaaggttaaacgtggtaatcgtgaa
atcatcgtaacttctaagactggtgaccaaaagaaatacttggttccattgtctaagcag
atccttgtacaggaacatgatgctgttcgtgcaggtacacctctttctgatggtgttaca
actccaggtgatattcttgctattaagggtcctaccgctgtacaggagtatattgttaac
gaagttcaggatgtttaccgtcttcagggtgtgaagattaatgataagcactttgaaatc
attgttcgtcagatgatgcgtaaggttcgtatcgatgatccgggtgatacaacattcctc
gagcaggaacttgttgataaactcgactttgctgatgaaaatgatcgtatttggggcaag
aaggtcgttacagatgcaggtgattcagaattgcttaaacctggtcagattgtgacggtt
cgtaagctaagagatgagaactctagcttgaagcgtagagacttgaagttagttcaggtt
agagatgctgttccagctacatctacccaaatccttcagggtattacccgtgcagctttg
ggtactaagagtttcatgagtgctgcatcattccaggaaactactaaggtactctgtgag
gctgcaattcgcggtaagagtgattatcttgagggtatgaaggaaaatgttatttgtggt
catttgattcctgcaggtacaggtcttcgtcaatggcagaaacttgttgtaggttcaaag
gaagaatatgagcgtatacaggctaatagaaagaatgttcttgactttgcagataacaat
gttgcaacagaataa

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