Pseudomonas bijieensis: GN234_09605
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Entry
GN234_09605 CDS
T07266
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbz
Pseudomonas bijieensis
Pathway
pbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GN234_09605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbz03019
]
GN234_09605
03009 Ribosome biogenesis [BR:
pbz03009
]
GN234_09605
Enzymes [BR:
pbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GN234_09605
Messenger RNA biogenesis [BR:
pbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GN234_09605
Ribosome biogenesis [BR:
pbz03009
]
Prokaryotic type
rRNA helicases
GN234_09605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QKS82181
UniProt:
A0A6N1CRL9
LinkDB
All DBs
Position
complement(2248884..2250557)
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERTGDRPDRGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatctcaacccgaacattcttgccgcc
gtcactgcgaccggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatc
atggccggccacgacatgattggccaggcgcaaaccggtacgggtaaaaccgctgcgttc
gccctgccgatcctgcatcgcatcgatcctgcaaagcgcgaaccgcaagccctgatcctg
gcgccaactcgtgagttggcgctgcaagtagcaaccgctttcgaaacctattccaagcag
atgcctggcgttaccgttgtggccgtctacggcggtgcgccgatgggcccacaactgaaa
gccatccgtaatggtgcgcagatcgttgtcgccactccgggtcgtctgtgcgatcacctg
cgtcgtgacgaaaaagtcctggccaccgtgaaccacctggttctggacgaagccgacgaa
atgctcaagctgggtttcatggacgacctggaagtcatcttcaaggccctgccagcaacc
cgtcagaccgtattgttctcggccaccctgccgcaatcgatccgtgccattgccgagcgc
cacctgcgcgatccgcagcacgtgaagatccagaccaagacccagaccgttaccgcgatc
gaacaagctcacctgctggttcacgctgaccagaagacttccgctgttctcagcttgctg
gaagtggaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaatggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgcctggacatcgtggtc
gcgaccgacgtcgcggcccgtggcctggacgttccgcgcatcacccacgtgttcaacgtg
gacatgccgtacgacccggaatcctacgttcaccgtatcggtcgtaccggccgtgccggt
cgcgaaggccgcgcgctgctgctggttaccccgcgcgagcgccgcatgctgcaagtgatc
gagcgtgtgactggtcagaaagtcgctgaagttcgcctgccggacgctcaggctgttctc
gatgcccgcatcaagaaactgaccaacagcctgtcgccactggtggctgacgccgaatcg
acccacggtgatctgctcgatcgcctgaccgccgacatcggttgcaccccgcgcgcactg
gccgccgcactgctgcgcaaggccaccaacggccaagcgctgaacctggctgcaatcgag
aaggaacgtcccctggtgccgaacagcgccccgcgtggcgatcgtcctgagcgcaccggt
gatcgtccggaccgtggtgatcgcgagcgtcgtgccccgatcccgctggccgaaggtcgt
gctcgctgccgtaccgcgctgggtgcccgtgacggcatcgcggccaagaacctgctgggt
gccatcctcaacgaaggcggcctggcccgcgaagccatcggccgcatccaggtgcgtgac
agcttcagcctggtcgagctgccggaagatggtctggagaagttgctgaccaagctgaaa
gacacccgcgtggccggcaagcagctcaagctgcgccgctatcgcgaagattga
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