Pseudomonas bijieensis: GN234_20360
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Entry
GN234_20360 CDS
T07266
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbz
Pseudomonas bijieensis
Pathway
pbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GN234_20360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbz03019
]
GN234_20360
Enzymes [BR:
pbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GN234_20360
Messenger RNA biogenesis [BR:
pbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GN234_20360
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKS84169
UniProt:
A0A6N1CFP2
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All DBs
Position
complement(4656074..4657936)
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AA seq
620 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGGGGGGG
RKDKGKDKGKEKPASNSRGERPAREQKPREGTPAREQQRPVPRAAADRAPDEFLDDDIDN
FGNRVDYVPQQKPAQGRGRRPGAPAQGAGAGAPRSGQPQGRQNGPRNSNGSSTGTPPAKR
NGPRNGAPRDGQARRDDTRPRRPARDDQPRQEPAVQNPRSNQPKIMHKESKADRFPTPEQ
LDQLPSRPRGEKPALLTRNR
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggccgccggc
tacaccgagcctaccccggtgcaacagcgggccatccccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcgcagacaggtactggtaaaaccggcggtttcgcccttccgatcctg
gagcggttgtttcccaacggtcacccagacaaatcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgaccccaacccgcgaactggcggcccaggtccacgagagcttcaag
atctatgctcgcgacctgaagttcgtcagcgcctgcatttttggcggcgtcggcatgaac
ccccaggtccaggccatgtcccgtggcgtcgatgtactggtggcctgccctggtcgcctg
ctggacctggccggccagggcagcgtcgatttgtcccacgtcgaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaagaaagtgctcgcccgc
ctgcccgccaagcggcagaacctgctgttctcggcaacgttctccaaggacatcaccgac
ctggctggcaagttgctgcacaacccggagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgagcaacgcgtattccgcctgccggccagccacaagcgcgccctgctg
gcacacctgattaccgccggtgcctgggaacaggtcctggtgttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgccggcagtggcgatccac
ggtaacaagagccagaacgcccgcaccaaggccctcgccgacttcaaggccggcgaagta
cgcatcctggtagccaccgatatcgcggcccgtggcctggacatcgaccagttgccccac
gtggtcaacttcgagctgccaaacgtcgatgaagattacgttcaccgtatcggccgtacg
ggccgggccggtcgttcgggcgaagcgatctcgctggtcgcgccggacgaagaaaagctg
ctcaaaagcatcgagcgcatgaccaagcagaaaattgccgacggcgacctgatgggcttc
gatgccagcaccatcgaggccgagaagcctgaagtgcgcgaacgtccggacgtgcgcaac
ccgcgcaacgcccgaggcccacgtggcgacggcccgaatggcggcggtggcggcggtggc
cgcaaggacaaaggcaaggacaagggcaaggaaaaaccggccagcaacagccgtggcgaa
cgcccagcccgcgaacagaagccccgcgaaggcactccagcccgtgagcagcagcgccca
gtcccacgcgccgcagccgatcgtgccccggacgagttcctggacgacgacatcgacaac
ttcggtaaccgcgtcgactacgtgccgcagcagaaaccggcccagggccgtggtcgccgc
ccaggcgcaccggcacagggcgcgggtgcaggcgctccgcgcagtggccagccacagggt
cgccagaacggcccgcgcaacagcaacggctcgtccaccggcactccgccggccaagcgc
aacggcccacgcaacggtgccccgcgtgacggccaggctcgtcgcgatgacacccgcccg
cgccgcccggcccgcgacgaccagccgcgtcaggaacccgccgtgcagaacccgcgcagc
aaccaaccgaagatcatgcacaaggaatcgaaagccgatcgcttcccgacgcctgagcag
ctggatcaactgcctagccgtccacggggcgagaagccggcgttgctgacccgcaatcgc
tga
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