Pseudomonas bijieensis: GN234_26830
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Entry
GN234_26830 CDS
T07266
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbz
Pseudomonas bijieensis
Pathway
pbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GN234_26830 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbz03019
]
GN234_26830 (rne)
03009 Ribosome biogenesis [BR:
pbz03009
]
GN234_26830 (rne)
Enzymes [BR:
pbz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GN234_26830 (rne)
Messenger RNA biogenesis [BR:
pbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GN234_26830 (rne)
Ribosome biogenesis [BR:
pbz03009
]
Prokaryotic type
rRNA processing factors
GN234_26830 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QKS85332
UniProt:
A0A6N1CLM4
LinkDB
All DBs
Position
complement(6059188..6062373)
Genome browser
AA seq
1061 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPTEVA
APVAAPAAAPEPSLFKGLVKSLVSLFATKEEPAAPAVVAKPAATERPARNEERRNGRQQT
RNRNGRRDEERKPREERAPREERAPREPREERQPREAREEAPAVAREERAPRPPREERQP
RAPREDRKPRGEREERVRELREPLDAAPAVAAATAEERPARQPREERAPRPPREERQPRA
EQAAAAASEEEVLNTEEQLQEDGQDTAEGDRPRRRSRGQRRRSNRRERQRDANGNVIEGS
EESESTENAEAPSAADLAAGLAVTAAVASSAISAPAEAQAHEQAERATAAVESAPVAEAP
VVEATTPVETTASPEVEVAPAREAQVAETEVVAEPAPVVEQPVAAAEPAFEAPAEEKAPE
PAREEQTAFNWTAEPAAPAPVVEPEPTPEPVKAVEPEVVEPAPVVEAPVVVEAPAPVEAP
APASALTANGRAPNDPREVRRRKREAERLQKEAEQAAAAAAQAPAAEPAPVVEAVEAAPA
PVAETPVEPAPEIDAPQHTAEEVAPRHTEALEKEHEPKPHA
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccagcgc
ctctacgacctggatatcgaatccggtgcacgcgagcagaagaaggccaacatctataaa
ggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttcggctccgag
cgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaagcccctgaa
ggccgcgtcaatatcaaggacgtcctgagcgaaggccaggaagtcatcgtccaggtcgaa
aaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctggccggccgt
tacctggtcctgatgccaaacaacccgcgtgccggtggcatttcccgccgcatcgaaggc
gaagagcgcaacgaactgcgtgaagctctcaatggcctggtcgccccagctgacatgggc
ctgattgttcgcaccgccggccttggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgctccgcgccgttc
ctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctgcgccaggac
atcggcgaagtgctgatcgacagcgtcgaagcccaggacgaagccctgaccttcattcgc
caggtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgttccgctgttc
aaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtcgtcgaactgccg
tccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaaccttgaagcc
gccgaggaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaggtccgtgaatgc
ctggaggccgaccgcgcccgcgtacaggtcggtcgcatctcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgtccgtccctgggcgaaagcagcggcatcgtctgcccgcgt
tgcaacggcaccggcatcatccgtgacgtcgagtcgttgtccctggcgatcctgcgcctg
atcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcccaggtgccgatcccg
gtggctgcgttcctgctcaacgaaaaacgtaactcgatcaccaagatcgaactgcgcacc
cgtgcccgtatcgtcatcctgccgaacgatcacctcgagacgccgcactttgaagtgcag
cgcctgcgcgatgacagcccggaagcccacaccaaccagtccagctacgaaatcgctgcg
gctgctgccgaagtggaagaagtccagccggctgccgccacgcgcaccctggttcgccag
gaagcagcggtcaagaccgctccggcccgtgccaacgctccggttccgaccgaagtggcc
gctccggttgccgccccggccgccgcgcctgagccaagcctgttcaagggcctggtgaag
tcgctggtcagcctgttcgccaccaaggaagagcctgccgcgcctgccgttgtcgccaag
cctgccgctaccgagcgtcctgcccgcaacgaagaacgccgcaacggtcgccagcagacc
cgcaaccgcaacggtcgtcgcgacgaagaacgcaagcctcgcgaagaacgtgcaccgcgt
gaagaacgtgcgccacgtgagccgcgtgaagaacgccagccacgcgaagcccgtgaggaa
gcgccagccgtagcccgcgaagaacgcgcaccgcgtccgccgcgtgaagaacgccagcca
cgcgcaccacgtgaagatcgcaagcctcgtggcgagcgtgaagaacgtgttcgcgaactg
cgcgagccactggatgccgccccggccgttgcagcagccaccgctgaagagcgtccggcc
cgccagccgcgtgaagaacgtgcaccgcgtcctccacgtgaagaacgtcaaccacgtgcc
gagcaggcagccgccgctgccagcgaagaagaagtgctgaataccgaagagcagttgcag
gaagacggccaggacaccgccgaaggcgatcgtccacgccgccgctcccgtggccagcgt
cgtcgcagcaaccgtcgtgagcgtcagcgcgacgccaacggcaatgtgatcgaaggctcg
gaagaatccgagtccaccgagaacgccgaagcgccaagcgctgcggacctggctgccggc
ctggccgtgaccgcggccgttgccagcagcgcgatcagcgctccggccgaagcccaggct
cacgaacaagccgaacgcgccaccgccgcggtggaaagcgcgccggttgccgaagctccc
gtagtcgaagccactaccccggtagaaaccactgcttcgccagaagtggaagtcgctccg
gcccgtgaagcccaggttgctgaaactgaagtggtcgccgagcctgcaccggtcgtcgag
caaccagtggcagccgctgagccagccttcgaagcaccggccgaggaaaaggcaccagag
cctgcccgcgaagagcagacagcgttcaactggaccgccgagccagctgcaccggcgccg
gttgtcgaacctgagccgacaccagagccagtgaaagcggtcgaaccagaagtggtcgag
ccggctccagtggtcgaagcccccgtggtcgtcgaagcacctgccccggttgaagcgcct
gcacctgccagcgccctgaccgcgaatggccgcgcgccgaacgatccacgtgaagtgcgt
cgtcgcaagcgtgaagccgagcgcctgcagaaggaagccgaacaagctgccgctgccgcc
gctcaagcgcctgctgccgagccagcaccagtggtggaagccgtcgaggcagcccctgcc
ccggttgcggaaaccccggttgaaccagctccggaaatcgacgcacctcagcacaccgct
gaagaagtcgcgccgcgtcacactgaagccctggaaaaagagcacgagcctaaacctcac
gcctga
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