Syntrophotalea carbinolica: Pcar_0645
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Entry
Pcar_0645 CDS
T00285
Name
(GenBank) metal-dependent hydrolase, beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pca
Syntrophotalea carbinolica
Pathway
pca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pcar_0645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pca03019
]
Pcar_0645
Messenger RNA biogenesis [BR:
pca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pcar_0645
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GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
ABA87904
UniProt:
Q3A6V3
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Position
778266..779960
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AA seq
564 aa
AA seq
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MTEAFAATWQPLPPEAVRILPLGGLGEIGLNMMVVEYRDELLIIDCGLMFPEPHMPGIDL
VIPDISCLEDHTHRIRGLVLTHGHEDHIGAVPFLLRKLGFPTVYGSPLTLGLLRHRLAEH
DLLGLAELVEVAPRQALELGAFHVELFRVTHSIVDGLGLAIRTHMGWIVHTGDFKLDQTP
VDNQPTDLVRLAAYGEEGVLLLLSDSTNVEKKGFTLSEREVATAFGEIMPQARGLVVVAT
FSSNIHRIQQVVQAAVACGRKVVITGRSMEANTRIARELGYLKIPDDVLIDVRQARDLPR
HRVAMLTTGSQGEPQSCLVRMSRDEFKQLPLEKGDTVILSSKFIPGNEKAINRLINHLYR
RGSEVFYETTSEVHVSGHASQGELKMVLSLVRPDYFVPIHGEYRHLVKHAELARGMGVAG
ECIEVLEDGYPLCVSADGLVREPRLETGRVLVDGRGVGDVGHMELRDRRHVANHGLVVVM
LTVSTSDGSILYGPELLTRGFVAEEETDLLEAARSQLWETLEEIAPETSGERETLEVEVR
KCLRRFFNRSVERRPLILPIILEQ
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggcgtttgccgcgacatggcaacctttgccgcccgaggcggtgcggattctg
ccgctgggaggcctgggagaaatcggtctcaacatgatggtggtggaataccgggacgag
ttgctgattatcgactgcggcctgatgtttcccgaaccgcacatgcccggtatcgatctg
gtgatcccggatatcagctgcctggaggatcacacccaccgcattcgcggcctggtgctc
acgcacggccatgaagatcacatcggtgcggtgccgtttttgctccgtaagctcggcttc
ccgacggtgtacggttcgcctttgacgcttggtctgttgcgccacaggctggcggaacat
gatcttctcgggctggccgagcttgtcgaggtggcaccccggcaggcccttgagctgggc
gcctttcatgtcgagctgtttcgcgtcacccactccatcgtcgatggcctcggtctggct
attcgtacccatatgggctggattgttcacaccggtgatttcaagttggatcagacccct
gtcgacaatcagccgaccgatctggtacggctggctgcctacggcgaagaaggggtactg
ctgctgctgtccgattccaccaatgtggaaaaaaaaggatttaccctctcggagcgggaa
gtggcgacggcgtttggcgagattatgccgcaagccaggggcctggtggtggtggccacc
ttttcgtccaacatccatcggattcagcaggtggtacaggcggccgtcgcgtgtggacgc
aaagtcgtcatcaccggccgcagcatggaagccaatacccgcattgcccgggagttgggg
tatctgaagattcccgacgatgtgttgatcgatgtcaggcaggcccgggatctgccgcgt
caccgcgtcgccatgttgacgaccggtagtcagggtgagccgcagagttgtctggtgcgc
atgtccagagatgagttcaagcagctgcccctggaaaagggggacacggtcatcctttct
tccaagtttattcccggcaacgaaaaggccatcaaccggctgatcaatcatctgtaccgc
cgcggctctgaagtgttctatgaaaccaccagcgaagtgcacgtgtcgggacacgccagt
cagggggaactgaaaatggttctgtcgctggtgcggcccgattatttcgtgcctattcac
ggtgaataccggcatttggtcaaacatgccgagctggcgcgcggcatgggggtggccggg
gagtgcatcgaggtgctggaagacggttatccgctttgtgtttccgccgatgggctggtg
cgcgagccgcgactggagacgggacgcgtgctggtcgatggacgtggcgtcggtgatgtg
gggcacatggagttgcgcgatcggcgccatgtcgccaaccatggcctggtggtggtgatg
ttgaccgtcagtacctcggacggcagcattctgtatggaccggagctgctgacccggggg
tttgtcgccgaagaagaaaccgaccttctggaagccgcccggagtcagctttgggaaacc
ctggaggagattgcgccggaaacctccggggaacgggaaaccctggaggtggaggtgcgc
aagtgtctgcggcgctttttcaaccgcagcgttgaacgtcgtccccttattctgccgatt
atccttgaacagtag
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