Syntrophotalea carbinolica: Pcar_0694
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Entry
Pcar_0694 CDS
T00285
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pca
Syntrophotalea carbinolica
Pathway
pca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pcar_0694 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pca03021
]
Pcar_0694 (rpoB)
03400 DNA repair and recombination proteins [BR:
pca03400
]
Pcar_0694 (rpoB)
Enzymes [BR:
pca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pcar_0694 (rpoB)
Transcription machinery [BR:
pca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pcar_0694 (rpoB)
DNA repair and recombination proteins [BR:
pca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pcar_0694 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ABA87953
UniProt:
Q3A6Q4
LinkDB
All DBs
Position
840144..844250
Genome browser
AA seq
1368 aa
AA seq
DB search
MAYSVANNQLLRKHFSTIKGIIEIPNLIDIQKNSYKRFLQAGLPPSARKNIGLEAVFRSV
FPIRDFSETCSLDYVSYSLGTPKYDVGECHQRGMTFAAPVKVCVRLVSWDVDKESGVQAI
RDIKEQEVYFGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKILYNA
RVIPYRGSWLDFDFDHKDLLYVRIDRRRKLPATVLLKALGYSAEELLNYYYQVETVTVDG
DSFKKKVNLDLLAGQRASTDVLGNDGEIIVKANRKFTKAAIRKLADSNVEYIPVSEEEIV
GKVASTDIVDVSTGEVIVECNEEISESKLEELRTRGIVEFNILFIDHLHVGPYLRETLLL
DRMATPEDARIEIYRRLRPGDPPTIKSANALFESLFFNPERYDLSVVGRIKLNYKLGLQS
PEDQTTLTKDDILEVVRYLIGLRDGRGTIDDIDHLGNRRVRAVGELLENQYRVGLVRMER
AIKERMSLQEVDSLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEITHKRRLSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRI
VEQGKVTNEIRYFSALEEGGHAIAQANAPLDDDGRFLNELVNARQNGEFVLIQREEIGLM
DVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRADAPLVGTGMERIVAHDSG
AAVVARHNGVVESVDASRIVVKIDEGEVDEDGTGVDIYNLIKFARSNQNTCLNQKPIVKV
GDRVASGGIIADGPSTEWGELALGQNVLVAFMPWEGYNFEDSILISEKLVKEDRYTSIHI
EELECVARDTKLGKEEITNDIPNLGEDALKDLDESGIVRIGAEVKPGDILVGKITPKGET
QLSPEEKLLRAIFGEKAGDVRDTSLRLPPGVEGVVIGARVFSRKGSDKDSRTEYIEKTEI
EKLLKDQHDEIRIIRESTHGKLESLLVGQTSASALFDAAGKELLGQGEKITSEVLAEVPF
ARWREISLLDASENEEKLSAIMTSLAQREELIKAVFADKIEKIKRGDDLPPGVIKMVKVY
IAIKRKLSVGDKMAGRHGNKGVLSRVLPEEDMPYMADGTPVEIVLNPLGVPSRMNVGQIL
ETHLGLAARGLGVQIQEHLDRYYTPEAMRTKIGECYEDDRVAEFVDALPDDEVMQLARQL
SRGVPMASPVFEGVTEEQMKNQMERAGFASSGQMTLYNGKTGEAFKEKVTVGIMYMLKLH
HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAHALQEFLTVKSD
DVTGRTRMYEAIVKGKHTLEAGLPESFNVLIKELQSLCLDVELLEEQE
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcggttgcgaataaccagcttcttaggaaacattttagcacgattaaggga
atcatcgagattcctaacttgatcgatatccagaagaattcctacaagcgtttcctgcaa
gcagggctccctccttctgctcggaaaaatatcgggcttgaagcggtttttcgctcggtt
ttccccattcgcgattttagcgaaacctgctcattggactacgtttcgtactctctgggt
acgcctaagtacgatgtgggtgagtgccaccagcgagggatgacctttgccgctcccgtt
aaggtatgcgtgcgtcttgtgtcttgggatgtcgacaaggaatccggagtccaggcgata
cgcgacataaaagagcaggaagtctattttggcgagatccctttaatgaccgaaaacggt
acctttatcatcaatggtaccgaacgcgttatcgtgagccagttgcatcgttctcccggt
gtgttttttgatcatgataaaggcaagactcattcgagcggcaagattctttataatgct
cgagtgatcccgtatcgtggttcctggctcgattttgattttgatcataaagatctcctt
tatgtccggattgaccgcaggcggaaacttcccgcaacggttctgcttaaagctctcggt
tacagtgccgaagagttgttgaattactattatcaggtggagaccgttacggtagacggg
gactccttcaaaaaaaaggtcaatctcgaccttcttgcgggtcagcgtgcctcgaccgat
gtgctcggcaatgatggggaaattatcgtcaaggccaaccgcaagttcaccaaagcggct
attcgcaagcttgccgacagcaatgtagagtatatcccggtttctgaagaggaaatcgtc
ggcaaggttgcttccactgatattgttgatgtcagcaccggcgaggtcattgttgaatgc
aatgaggaaatcagcgagagcaagctcgaagagttgcgcacgcgaggcattgttgagttc
aacatcctgtttatcgatcatctccatgtagggccctacctgcgggagacgctgttgctg
gatcgcatggctactcccgaggatgcccgcatcgagatctacaggcgtctgcgtccagga
gatccgccgaccataaagagcgctaatgcgctttttgaaagcttgttcttcaaccctgag
agatatgatctttcggtggtcggacgtatcaaactgaactacaagttggggcttcaatcg
cctgaagatcagaccacgctcaccaaggatgatatcctcgaagtcgttcgctatctcatc
ggtctgcgcgatgggcgcggtaccattgatgatatcgatcatcttgggaatcgtcgcgtg
cgcgcagtgggcgaactgctggaaaatcaataccgtgtcggcctggtgcggatggagcgg
gcgattaaggagcgcatgagtctgcaggaagtcgacagcctgatgcctcacgatctgatc
aattccaagcctgtttcggcagtggtcaaggagttcttcgggtcatctcagttgtcccag
tttatggatcagaccaatcctttgtctgaaattacccataaacgacgtctttcggctctg
ggacccggtggtcttacccgtgagcgtgccggttttgaggtgcgcgacgttcatccgacc
cattatggacgtgtctgtccgattgagacgcctgaaggtcccaatatcggtttgatcgcg
tccctgtcaacctatgcgcggatcaacgagcatggattcgttgagactccctacaggatc
gttgagcaggggaaggttaccaacgaaatccggtatttttcggctttggaagagggcggc
cacgccatcgctcaggccaacgcgcctttggatgacgacggacgcttcctcaacgaattg
gtcaacgcgagacagaacggcgaattcgtgcttattcagcgcgaagaaatcggccttatg
gacgtttcgcccaagcagctcgtttcggttgccgcctcgctgatcccgtttttggaaaac
gatgatgccaaccgtgcgttgatggggtcgaacatgcagcgccaggcggttcccttgctg
cgcgccgatgcaccgctggtcggtaccggtatggaacgtattgtcgctcacgactccggg
gccgccgtagttgcgcgccataacggtgtcgttgagtcggttgatgcatcgcgaattgtt
gtgaagattgacgaaggcgaagtggatgaagacggaaccggcgttgatatttacaatctg
atcaaattcgcccggtcgaatcagaacacctgcttgaatcagaaaccgatcgtcaaggtc
ggtgaccgggttgccagcggcggtatcatcgcagatggtccctccacggaatggggtgaa
ctggctttggggcaaaacgtgctggtcgcgtttatgccctgggaaggttacaacttcgaa
gattcgatcctgatttctgaaaagctggtcaaggaagatcgctatacttccatccacatc
gaggaattggaatgtgtagcgagggataccaagctgggtaaggaagagatcaccaacgat
atccccaatcttggcgaggacgcccttaaggaccttgacgaaagcggtattgttcgtatc
ggtgccgaagtcaagcccggtgacatcctggttggtaaaatcacgcctaaaggcgaaacc
caactgtctcccgaagaaaaactgctgcgtgcaattttcggggagaaagccggcgatgtt
cgcgacacgtccttgaggcttccgcccggcgtggaaggtgtggttatcggcgctcgggtc
ttttcccgtaagggttcggacaaggacagccgtaccgaatatatcgaaaagaccgaaatt
gaaaaactgctcaaggatcaacacgatgagattcgcattatacgcgaatcgacccatggc
aaacttgagtcgcttctggtaggccagacctcagcctccgcgttgttcgatgccgcaggc
aaagaactgctcgggcagggggagaagattaccagtgaagtgttggccgaggtgcccttt
gcgcgctggcgtgaaatcagcctgctggatgcctccgaaaacgaagaaaagttgagtgcc
atcatgaccagtcttgctcagcgcgaagagctgatcaaggccgtgtttgccgataagatc
gaaaagataaaacgcggagacgacctgccgcctggtgtcatcaaaatggtcaaggtctat
atcgccatcaagcgcaaattgtcggttggtgacaagatggctggccgtcacggtaataag
ggtgtcctgtccagagtgttgcctgaagaggatatgccttatatggccgatggcactccg
gttgaaattgtcctcaatccgctcggcgttccttcgcgtatgaacgtcgggcagatcctc
gaaacacatctgggacttgccgctagaggtctcggggttcagattcaggagcatctggat
cgttattacacccccgaggcgatgcgtaccaagatcggcgagtgttatgaggatgatcgg
gtcgccgagttcgtcgatgcccttccggacgacgaggttatgcagcttgcgcgtcaatta
tcgcgcggggtgcccatggcttcgcccgtcttcgaaggggtcaccgaagagcagatgaaa
aaccagatggagcgggccggcttcgcatccagcgggcagatgaccttgtacaacggtaaa
accggcgaagctttcaaggagaaggtcaccgtcggtatcatgtatatgcttaaattgcat
cacttggtcgacgataaaattcatgcacgtagtatcggcccttacagtcttgtgacccag
cagcctctaggcggcaaggcgcaattcggtggacagcgtcttggtgagatggaagtctgg
gccatggaagcttacggtgccgctcatgcgctgcaggagtttttgaccgtcaagtccgac
gatgtcaccgggcgtacgcgcatgtacgaggctatcgtcaagggtaaacatactcttgag
gccggattgcccgagtcgttcaatgtcctcatcaaggaactgcagtccctttgtctggat
gtcgaactccttgaggagcaggaataa
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