Syntrophotalea carbinolica: Pcar_0735
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Entry
Pcar_0735 CDS
T00285
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pca
Syntrophotalea carbinolica
Pathway
pca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pcar_0735 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pca03019
]
Pcar_0735 (rhlB)
Enzymes [BR:
pca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pcar_0735 (rhlB)
Messenger RNA biogenesis [BR:
pca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pcar_0735 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_11
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABA87994
UniProt:
Q3A6L3
LinkDB
All DBs
Position
872856..874157
Genome browser
AA seq
433 aa
AA seq
DB search
MKFTELNLPAEVQRGIDAMGFTALTPVQEQSIPLALDKKDVAAQAQTGTGKTAAFLISLF
ARLMSDKKTETRAPRALILAPTRELVVQISKDAMGLGQFCGFKIQPIFGGVDYEKQRQAL
HAGVDILIATPGRLIDYVKQGAVSLGSIEALVIDEADRMFDMGFIRDLRYILRKLPAFDR
RQTMLFSATLSHRVMELAYEFMDLAEKIKVAPENVTAEQIEEVLYHVSRREKFALLLGLL
KKEPAKCVMLFVNTKREAEHLTGRLQVNGFKAALISGDIPQKKRMRILDEFKEGRIHFLV
GTDVASRGIHVDGVTHVINYDLPQDREDYVHRIGRTARAGAAGKAISFADEDLVYYLADI
EDYIGHRIPSVFPEDSDFCHTYKAYKPVKKSARGRSAAKPGSPPKKDGAPRRRRPRRRPR
GKSSGAPSGKDKS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaccgagctgaacctgcccgcagaagtccagcggggaatcgatgccatggga
tttaccgccctgacccccgtgcaggaacaatcgataccgctggcgttagacaaaaaggat
gtggctgctcaggcgcagaccggtaccggcaagacagccgcttttctcatttccctgttt
gctcggttgatgagcgacaaaaaaacggaaacccgtgctccgcgcgccctgattctcgct
cccacgcgcgagttggtggttcagatctccaaagatgccatggggcttggacagttttgc
ggattcaagatccaaccgattttcggcggtgtcgattacgagaagcagcgacaggccttg
cacgcgggggtcgatatccttatcgccacgccggggcggctgatcgattacgtgaaacag
ggagcggtgtccctcggcagtattgaagccctggtcatagacgaggccgatcgcatgttc
gatatgggatttatcagggatcttcgttacatcctgcgaaaattgccggctttcgatcgg
cgtcaaaccatgctgttttcagctaccttgtcccatcgcgtcatggagttggcttatgaa
ttcatggacctggccgaaaagattaaagtcgccccggagaatgtaaccgctgagcagatc
gaagaggtgctttaccatgtttcccgtcgggaaaaattcgctttgctgctgggactgttg
aaaaaagaacccgccaagtgtgtgatgctgttcgtcaataccaagcgcgaagccgaacac
cttaccggtcgtttgcaggtcaatggtttcaaggccgctttgatttccggcgatatcccc
cagaaaaagcgcatgcgtattctggatgagttcaaagaaggccgtattcattttttggtg
gggaccgatgtcgcgtcacgcggtatccatgtcgatggcgtaacccatgtcattaactac
gatctgccccaggatcgcgaggattatgtgcatcgcatcggtcgtacggcccgtgcgggt
gccgccggcaaggccatcagttttgccgatgaggacctggtttattatctggccgatatc
gaggattatatcggtcatcgaattccttccgtctttcctgaagacagcgatttctgccat
acatacaaagcctacaagccggtaaaaaagtctgcgcggggccgctctgccgcaaaaccc
ggctctcctccgaagaaggacggagcaccgcgccgtcgccggccgcgcaggcgtccccga
ggcaagtcatccggagcgccgtccggaaaagacaagtcgtga
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