Syntrophotalea carbinolica: Pcar_1100
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Entry
Pcar_1100 CDS
T00285
Name
(GenBank) efflux pump, RND family, inner membrane protein
Organism
pca
Syntrophotalea carbinolica
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Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
ABA88349
UniProt:
Q3A5K8
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Position
1292940..1296122
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AA seq
1060 aa
AA seq
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MNIAKFFIDRPIFATVLSVLIVIVGGLAYFSLPIEQYPQVAPPTIEITATYPGANAETVA
ATVATPIEQEVNGVEGMLYMFSQSTSDGRMTLTITFALGTDLDTAQVLVQNRVAVAEPRL
PEEVRRLGITTKKNTPDLMLVVNMYSPDGTYDQTYIGNYAVLNILDRIRRIDGVGNVRLF
GASEYAMRIWLDPDRIQSFGMTPGDVLDALRAQNVQVAGGALNQAPQPKQNYYEYVVQTQ
GRLKAPEEFGDIIVKSGENGRIVYLRDIARIELGAQDYATKGYLGKYPAVALPAYQRPGS
NALETADAIIKEMREIGKDFPPGLQYDIAYNPTQFIEESVVAVQHTVYEAIVLVLIVIVL
FLQTWRAAIIPIVAIPVSLIGTFAVMAALGFSLNTLTLFGLVLAIGIVVDDAIVVVENME
RNMRAGLSPRDAARKTMTEVGSALVAIGLVLVAVFLPTIFLGGLSGKFYQAFGITIAVAT
MISVFVSLTLSPALAAILMKPGDHDTHGPGRWYKTPLRFFFHYFNTGMEWLSDRYGRLVG
KLVFLGGPVLLLYAGLMALTGWQFDRVPSGFIPPMDQGYAIVSVELPPGASLSETDKVVQ
VATRKLLAIDGVDDVIGFAGFSGATRANASNAAGLFPTLKPFKEREKKGITFESLLQKMR
TEMATIKEASIVVIPPPPVRGIGSAGGYRMMIQDRGGRGVDALNSAVWAMAEAANGPGTP
ETRSVFTFFEKNTPQTFLDIDREKAERLHVPVSRAYEALEVFIGSAFVNDFNYLGRTFRV
TAQADAPYRLSAEDMLRIKVRSDDGAMVPLGSIARVHNAAGPSRMPRYNLYPSAALIGDT
APGYSSGQALEAMERLADKVLPEGIGYEWTELAYQQKATGNTAVIAFVLAVVFVFLLLAA
QYESWTLPLSVILIVPMCLLSAISGVALMGMDNNVLTQIGFVVLVGLACKNAILIVEFAR
ELERQGRDRWQAAVEAAHLRLRPILMTSFAFILGVVPMVLAQGAGAEMRRALGVAVFSGM
LGVTFFGLVFTPVFYVLCRKLSLIRVKEAPGKAAPEGTES
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaacattgccaaattcttcatcgaccggcctatattcgctacggttctttcggttctc
atcgtgattgtcggcgggctggcctatttcagcctgccgatcgagcaatatccgcaggtg
gcgccgccgaccatcgagatcacagccacctatcccggcgccaatgccgagaccgtggca
gccaccgtggccacgccgatcgagcaggaagtcaacggtgtcgaggggatgctctacatg
ttctcccagtcgacctccgacggtcgcatgaccctgaccatcacctttgccctgggaacc
gacctggataccgcccaggtgctggtgcagaaccgtgttgccgtggccgaaccccgcctt
ccggaagaagtgcgtcgcttgggcataaccacgaaaaagaacacgccggatctgatgctg
gtcgtcaacatgtattcaccggacggcacctatgatcagacctatatcggtaactacgcg
gttctgaatatccttgaccgcatccgacgcatcgatggggttggcaatgtccgcctgttc
ggagcgtcggaatatgccatgcgcatctggctcgacccggatcgcattcaatcattcggc
atgacgcccggcgacgtgttggatgcgctgcgggcacagaacgtccaggtcgccggcggt
gcgctgaatcaagcgccgcaaccgaaacagaactattacgaatatgtcgttcagacacag
ggcaggctgaaagcaccggaagagtttggcgacatcatcgtgaaatccggcgagaacggc
cggatcgtatatctgcgggatattgcgcggatcgagttgggtgcgcaggattacgcgacc
aagggttatctgggtaaatacccggccgtggccttgcccgcctatcaacggcccggctcc
aatgcattggagacggccgatgcgatcatcaaggagatgcgcgaaatagggaaggatttt
cctcccggtctgcaatacgacatcgcctacaatccgacccaatttatcgaagagtccgtc
gttgccgtccagcacaccgtgtacgaagccattgttctggtgctcatcgtgatcgtcctt
tttctgcaaacctggcgggcggcgattattccgattgtcgccattccggtttcgctgatc
ggaacttttgccgtcatggccgcgctcggtttttccctgaatactcttaccttgttcgga
ctggtactggccatcggaatcgtggtcgatgacgcgatcgtggtggtggagaacatggag
cgcaacatgcgcgccgggctatcgcccagggatgctgcccgcaagacgatgaccgaggtc
ggctcggccctggtagccattgggctggtgttggtcgccgtgttcctgcccacaattttt
ctcggagggttgtcggggaaattctatcaggcattcggcattaccattgccgtggcgacc
atgatctcggtctttgtttccctgaccctttcgcctgctttggcagccattctgatgaaa
ccgggcgaccatgatactcacggacccggacgatggtataagacgccgctgagatttttc
ttccattatttcaacaccggaatggaatggctatcggatcgctacggcagactggttggc
aaactggtgtttctgggcggcccggttctgctgctttacgcgggcttgatggcgctgacc
ggctggcaattcgaccgcgttccatccggttttatcccgcctatggatcagggctatgcc
attgtttcggtagagcttccccccggtgcgtccctgtcggaaaccgacaaggttgtgcaa
gtggcgacccgcaaacttctggccattgatggcgtggatgacgtgataggttttgccggc
ttttcaggggcgacgcgcgccaacgcttccaacgcggctgggctgtttccaacgctgaag
ccgttcaaggaacgggaaaagaaaggcattaccttcgaaagcctgttgcagaaaatgcgt
accgagatggccacgatcaaggaggcctccatagtcgtcatcccaccgccgccggtgcgc
ggcatcggatctgccgggggctaccggatgatgattcaggatcgcggggggcgaggcgtg
gacgcattgaacagtgcggtctgggcgatggccgaagcggccaacgggccaggaaccccg
gagacgcgttccgtttttaccttctttgaaaaaaatacgccgcagacttttctggatatc
gaccgcgaaaaggccgaacgcctgcatgtgccggtctcccgcgcatatgaagcgctggag
gtctttatcggctccgccttcgtaaacgatttcaactacctgggacggacattccgggtt
acagcgcaggccgatgcaccctaccggttgagtgccgaagacatgttgcgcatcaaggtg
cgcagcgacgatggggccatggtgccgcttggctcgatcgcccgtgtccataatgcggcg
ggtccgtcccgcatgccgcgctacaacctgtatccgtctgccgctttgatcggcgacacg
gcccccgggtacagttctgggcaggccctggaagccatggagcggttggccgacaaagtc
ttgcccgaagggatcggctacgagtggacggaactcgcttaccagcaaaaagcgaccgga
aataccgcggtcattgccttcgtcctggcggtagtctttgtgttcctgttgctggcggcc
caatatgaaagctggaccctgccgctttccgtcattctgatcgtgccgatgtgtctgctg
tcggcgatcagcggcgtggccctgatggggatggacaacaatgtcctgacccagatcggt
tttgtcgtgctggtggggctggcatgcaagaacgccattctgatcgtcgaattcgcccgc
gaactggaacggcagggccgcgaccgctggcaagctgctgtcgaggcggcacacctgcgc
ctgcgcccgattcttatgacctcctttgccttcattctcggcgtggtgccgatggtgctt
gcccagggagccggagcggaaatgcgccgggctctgggggtggcggtcttttccggcatg
ctgggcgtaacctttttcggtctggttttcacgcctgttttttacgtgctgtgccgcaag
ctgtccctgatcagggttaaagaagcccccggtaaagccgccccggaaggaaccgaatca
tga
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