Syntrophotalea carbinolica: Pcar_1415
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Entry
Pcar_1415 CDS
T00285
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
pca
Syntrophotalea carbinolica
Pathway
pca03030
DNA replication
pca03430
Mismatch repair
pca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pcar_1415 (holA)
03430 Mismatch repair
Pcar_1415 (holA)
03440 Homologous recombination
Pcar_1415 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pca03032
]
Pcar_1415 (holA)
03400 DNA repair and recombination proteins [BR:
pca03400
]
Pcar_1415 (holA)
Enzymes [BR:
pca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pcar_1415 (holA)
DNA replication proteins [BR:
pca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pcar_1415 (holA)
DNA repair and recombination proteins [BR:
pca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pcar_1415 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_gamma3
HEAT_Maestro_2
Motif
Other DBs
NCBI-ProteinID:
ABA88661
UniProt:
Q3A4P6
LinkDB
All DBs
Position
1662806..1663798
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AA seq
330 aa
AA seq
DB search
MTPGELKKRIRDKTLPALLFLYGEETFFVERSLRQIIDATIPVEARDFNLQIFHGKDSRA
VSILDTARTLPVFSPIRLVVVRDTQDVPAAELEQIIPYLSDAVPETILVFTGNKIDGRRK
FYQVFKKFGALVEFKKLYDNQIPSFVTDQSQDLGFDFTEEALALFCKRVGSHLQEIHGEL
SKLLNFLGGRRVAEVADVMTVVSDSRVDSVFDLSDALGKRDVGEALRLLHRLLAEGIAPL
LILAMITRHFRQLWKAHELLQQRVAEKDMARRIGINPYFVSGLVAQARRFPGHGFRGIFE
ALLETDLALKSTGSSPSVVLESLVLRLAAK
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcctggggaattaaagaagcggatacgcgacaagactctgccggctttgctgttt
ctttatggcgaagagacattttttgtcgagcgcagcctgcgtcaaattatcgatgcgacc
attcccgtcgaagcacgcgatttcaacctgcagatttttcatggcaaggacagtcgagcc
gtgtccattttggacacggctcgtacgttgcccgttttcagccccatccggttggtggtc
gtgcgcgatacgcaggatgtgccggcggcggaacttgagcagattattccttatctcagc
gatgccgtacccgaaaccatactggtttttaccggtaataaaattgacgggcgccgcaag
ttctaccaggtttttaagaaattcggcgcattggtcgagtttaaaaaactttacgataac
cagataccttctttcgttaccgaccagtcccaagatctcggattcgattttaccgaagag
gctctggcgttgttttgcaaaagggtcggatcgcatctccaggaaatccatggcgagtta
agcaagttgcttaatttcctcggcggacggcgcgtggcggaagttgccgatgtcatgacc
gtagtgtctgacagtcgggtcgatagcgttttcgatttgagcgatgctctcggtaaaagg
gacgtgggggaagcattaaggctgttacatcggcttctggccgaagggatcgcgccgttg
ttgattctggccatgattacccgacattttcgtcaactgtggaaggctcatgagctgttg
cagcagcgtgtcgcggaaaaggatatggcacgtcgtatcggtatcaatccgtattttgtg
agtggtttggttgcccaggcacgtcgtttcccggggcatggtttccgggggatttttgaa
gccttgctggaaacggatctcgctttgaaatcaacgggatcgtcgccatcggtggtgctt
gaatctctggttttacgattggcggcgaagtag
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