Syntrophotalea carbinolica: Pcar_1994
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Entry
Pcar_1994 CDS
T00285
Symbol
gnfM
Name
(GenBank) nitrogen fixation master sigma-54-dependent transcriptional response regulator
KO
K07712
two-component system, NtrC family, nitrogen regulation response regulator GlnG
Organism
pca
Syntrophotalea carbinolica
Pathway
pca02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Pcar_1994 (gnfM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
pca02022
]
Pcar_1994 (gnfM)
Two-component system [BR:
pca02022
]
NtrC family
GlnL-GlnG (nitrogen regulation)
Pcar_1994 (gnfM)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
Mg_chelatase
AAA
PDE8A_N
AAA_3
VpsR
AAA_16
AAA_2
HTH_30
AAA_PrkA
ATPase
bpMoxR
Parvo_NS1
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
ABA89235
UniProt:
Q3A322
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All DBs
Position
2325640..2327073
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AA seq
477 aa
AA seq
DB search
MSIQRILVADDEESIRWVLRKALTKQGFTVDLAADGEEAKTFFKRRQYDLAILDIKMPDL
SGLELLRYFQEQRPEMLVIIITAESSMKNAVEAMKLGAYDYLTKPFDLDALEAIIVKAQK
AAAAAEEVHRLKTELKEQYPLDRAIIGKSKPMQEIYKILGRVAPTDVTVLITGESGTGKE
LVARAIHYNSPRVGKDFLALNCAAIPSELLESELFGHEKGAFTGATERKIGKFEQASGGT
LFLDEIGDMPLELQAKLLRVLQEREITRTGGSSSIPVDVRIVAATNQNLREQVAAREFRE
DLFYRLNVVPIAIPPLRDRRDDIPLLVEYFLDRVREDLNVGVQGCTKEAMAHLRRHDWPG
NVRELENTLKRAALLSSDQLLTPNDFPGLVPEPARKETDESLEALISNKLLATFAPMDVN
ELNNLYQMVLHQMERPLISIILEKTRGNQVRAAEILGINRNTLRKKIQTLDIDLKEL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtccattcaacgcattctggtagcagatgacgaggaaagcatccgctgggtgctgcgc
aaggcgctcaccaaacaaggcttcaccgtggatctggccgccgatggcgaagaagccaaa
accttcttcaaacgccgccaatacgacctggctattttggatatcaaaatgcccgacttg
tcgggcctggaactgctgcgctattttcaggaacagcgtccagaaatgctggtcatcatc
atcaccgccgaatcttccatgaaaaatgccgtggaagccatgaaactgggggcgtacgat
tacctgaccaagcctttcgatctggatgccctggaagccatcattgtcaaagcccagaaa
gccgccgcggcagccgaagaagtgcatcgcctcaagaccgaactgaaggaacagtaccca
ctggatcgggcgattatcggcaaaagcaagccgatgcaggaaatatacaagatcctcggc
cgggtggcgccaacggatgtcaccgtgctcattaccggcgaaagcggtaccggcaaggag
ttggtggccagggcgattcattataacagccccagggtcggcaaggacttcctggccctt
aactgtgccgccatccccagcgaacttcttgaaagtgaacttttcggtcacgaaaaaggg
gcgtttaccggcgccacggaacgcaaaataggcaagttcgaacaagccagcggcgggacc
ctgtttctggatgaaatcggcgacatgcctctggagctgcaagccaaactgctgcgtgtt
ttacaggagcgggaaatcactcgtaccggcggcagcagctcgatacccgtggatgtacgc
atcgttgcggccaccaaccagaatctgcgcgaacaggttgccgccagagagttccgagaa
gatcttttttaccgcctcaacgtggtgccgattgccatcccgcccctgcgggaccggcgg
gacgacatccccttgctggtcgaatacttcctggatcgggtccgcgaagaccttaacgtc
ggggtgcagggatgcaccaaggaagccatggcgcacctcaggcgtcacgactggccgggc
aacgtccgcgagctggaaaacaccctcaaacgggcggccctgctgtcctccgaccaactc
ctcacgcccaacgattttcccggattggtaccggagccggcccgcaaggaaaccgatgaa
tcgcttgaagcgctgatttcaaacaaactgctggcgactttcgcgccgatggacgtcaac
gaactgaacaatctctaccagatggttctgcatcagatggaacggccgctgatttccatt
atcctggaaaaaacccgtggcaaccaggtaagggccgccgagatcctgggcatcaatcgc
aacactctgcgcaaaaagatccagaccctggatatcgacctgaaagaactttag
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