Syntrophotalea carbinolica: Pcar_2013
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Entry
Pcar_2013 CDS
T00285
Symbol
yhaM
Name
(GenBank) 3'-to-5' exonuclease YhaM
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
pca
Syntrophotalea carbinolica
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pca03019
]
Pcar_2013 (yhaM)
Messenger RNA biogenesis [BR:
pca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pcar_2013 (yhaM)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
HDOD
TraI_2
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
ABA89254
UniProt:
Q3A303
LinkDB
All DBs
Position
complement(2344281..2345444)
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AA seq
387 aa
AA seq
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MKKVYAGHIKDRDIVNDSFLVREKITAMARNGKPYLTLKLMDRSGEVEGRVWDRVEEFSG
CFDKDDFIEVQGKASLYLGKMQLVIQKLRKVDDSQIDLGDYLPVATRSIEDMVAELRDQV
ASLQTPCFKDLMELFLADEAFMQGYTSAPAAKAIHHVYLGGLLDHSLSVARLVDDICRHY
PTVNRDLLLTGALLHDIGKVAELCYERAFGYTDAGKLLGHITIGFQMLDSKLAEITDFPG
DLALLLKHLLLSHHGQYEYGSPKRPKTLEAIILNYLDDLDSKINGIQTHMDKDPDNEQTW
TGYHRIYDRYFYKSPNASASRECDAACTSTAASTSPSSREVPAATQTVPAKERRPSEKRR
KGLNFTLGDQLRGKNLDLFASEEKEEK
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaaagtttatgcggggcacattaaggatcgggatatagtgaacgactcctttctg
gtgcgcgaaaaaataaccgccatggcgcgtaacggcaagccctatctgaccctcaagctg
atggatcgtagcggcgaggtggaggggcgtgtctgggatcgtgttgaagagttttcgggt
tgttttgacaaggatgatttcatcgaggtgcagggcaaggccagtctgtatctcggtaaa
atgcagttggttattcaaaagctgagaaaggtcgatgattcgcagatcgacctgggcgat
tatctgcctgttgcgacgcgtagcattgaggacatggtggcggaactcagggatcaggtt
gcgagtttgcaaacaccctgtttcaaagatctgatggaactttttctggccgatgaagct
tttatgcagggttacacaagcgccccggctgccaaggccattcaccatgtctatctcggg
gggctgctcgatcattccttgtcggtagctcgcctggtggacgatatttgccgtcattat
cccacggtcaaccgcgacctgttgcttaccggcgctttgctccacgatatcggcaaggtg
gcggagctgtgctatgagcgcgcttttggttacaccgatgcgggaaagctgctcgggcac
attaccatcggttttcagatgctggatagcaagttggctgaaattaccgatttccccggc
gatttggcactgcttctgaagcatctgctgttgtctcatcacgggcagtacgaatacggt
tcgcccaagcggccgaaaacccttgaagcgattattctcaattatctggacgatcttgat
tccaagatcaacggcatacagacccatatggataaagatccggataacgagcagacatgg
accggttatcatcgcatctacgatcgctatttttacaaaagccccaacgcttctgccagc
cgcgaatgcgatgcggcctgcacatctacggcagcatcgacatcaccctcctctcgcgag
gtgccagcggcaacccaaaccgtgccggcaaaggagcgacggccttccgaaaagcgccgt
aagggattgaatttcactttgggggaccagttgcgcgggaagaacctggatctctttgca
tcggaagaaaaggaagaaaagtga
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