Syntrophotalea carbinolica: Pcar_2042
Help
Entry
Pcar_2042 CDS
T00285
Name
(GenBank) lytic transglycosylase, SLT, LysM, LysM, LysM and LysM domain-containing
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
pca
Syntrophotalea carbinolica
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pca01011
]
Pcar_2042
Enzymes [BR:
pca01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Pcar_2042
Peptidoglycan biosynthesis and degradation proteins [BR:
pca01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Pcar_2042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM_RLK
Motif
Other DBs
NCBI-ProteinID:
ABA89283
UniProt:
Q3A2X4
LinkDB
All DBs
Position
complement(2374695..2376548)
Genome browser
AA seq
617 aa
AA seq
DB search
MLKRYGLVILVAGLLAGCQTSMQSVAVGGGDEPADSVRMEAVADSGMEQPPTRGLGAADD
VKDNDVPAVESGLETEDALNVCEVPVDPETLEDMELLSDVDKKPPEDEGDTAVERDPVYD
LPVVENDKVRYFIDYYTKRGSRGFRRWLERSGRYLPMMQAVFAEEGLPLDLAYLAMIESG
FNVKACSRANAVGPWQFIASTGKMYDLHNEWWRDERRDPVKATRAAARHLRDLHARFNGD
WPLAIAAYNAGPGKVSQAIRRTGSRDFWKISRGKHLRAETRNYLPKLFAVLHIAKSPAKY
GFENLRYQAPLVYDEVALPSSTDLDIVARLCDVKYEDIQNLNPELKRWCTPPGIKNYRLR
IPAGKREAFMKAYAKIPANRRANYRHYRVRSGDTLGALAVRYGIRSRDIMLLNRIKNPRA
LRIGSDLILPLRRDYSKAPVAALGDDYVRSKTRSYKVRNGDSLWRIARRFNVSTAQLAAW
NGMAVNGVLRPGKVLKVAGGASRKLVLTGTYRVRSGDNLWTIARKRNVTVSQLCAWNGLS
KNSLLKPGMVLKLAAAGGSVKSRKIIYKVRSGDSLWSISRRFDLAIGKICSLNNLGRKHV
LQPGQKLTLLVGDDHRG
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaaagatatgggcttgtgattttagttgcaggactgttggccggttgtcaaacg
tccatgcagtcggttgccgttggcggtggggatgagccggccgattccgtgcgcatggag
gcggtagccgactcaggtatggagcagccgcctaccaggggtctcggggcagcggatgac
gtgaaggataatgatgttccggcggtcgaatccggtctggagaccgaggatgccttgaat
gtttgtgaggtgcccgtggatccggaaactttggaagacatggaacttctttccgatgtc
gataaaaaaccgccggaggacgagggcgacacggccgtcgaaagagatccggtgtacgat
ctgccggttgtggaaaacgacaaggttcgttatttcatcgactattacaccaagcgcggc
agtcgcggctttcggcgctggttggaacgttcagggcgttatctgccgatgatgcaggca
gtgtttgccgaggaggggctgcccctggacctggcttatcttgccatgatcgaatccggt
tttaacgtcaaagcctgcagtcgcgccaacgccgtcggtccatggcaatttattgccagt
accggcaaaatgtacgatttgcataacgaatggtggcgtgacgaacgccgcgatccggtc
aaagccaccagggccgccgcgcgccatctgcgagatctgcatgcgcgttttaacggggac
tggcctttggccattgccgcctacaatgccggacccggcaaggttagtcaggctattcgc
aggacaggcagtcgtgatttttggaaaatcagcaggggaaagcacctgcgcgccgaaacc
cgcaactatctgccgaaattattcgcggtgttgcacatcgccaagagtccggccaaatac
gggttcgaaaatctccgctatcaggcgccgctggtttacgatgaggtcgctttacccagc
agcaccgatctggatatcgttgcccgtttatgcgacgtgaagtatgaggatattcaaaac
ctcaaccccgaactgaaacgctggtgcacgcctcccggcataaagaactaccgactgcgg
attcctgcgggcaaacgcgaggcttttatgaaggcgtatgccaaaattccggctaaccgt
cgagccaattaccgccattatcgggtgcgttccggtgacacccttggtgcgctggccgtc
cggtatggcatccggtcgcgggatatcatgctgctgaaccgcatcaaaaatccccgcgcc
ttgcgcatcggtagcgatttgattctgccgttgcggcgcgattattcaaaagcgccggta
gcggccttgggggacgattatgttcgctccaaaacccgcagctataaagttcgcaacggg
gatagcctgtggcggattgcacgtcgctttaacgtcagcaccgcgcaactggcggcctgg
aacggcatggcggttaacggcgtgttgcgcccgggcaaggttttaaaggttgccggaggg
gcgtcccgcaagcttgtgcttacagggacataccgcgttcggtcgggcgataatttgtgg
accattgccagaaagcgtaatgtgacggtcagccagttgtgtgcctggaacggacttagc
aaaaatagtttgctgaaacccggcatggtgctgaagcttgcggctgccggcgggtctgta
aaatcacgcaaaatcatttataaagtgcgctccggtgacagtttgtggagcatcagtcgt
cgctttgatctcgcgattgggaagatttgcagcttgaacaacctgggtcgaaagcatgtg
ctgcagcccgggcagaaactgaccttgctggttggtgacgaccaccggggataa
DBGET
integrated database retrieval system
