Syntrophotalea carbinolica: Pcar_2051
Help
Entry
Pcar_2051 CDS
T00285
Name
(GenBank) helicase, putative
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pca
Syntrophotalea carbinolica
Pathway
pca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pcar_2051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pca03019
]
Pcar_2051
03400 DNA repair and recombination proteins [BR:
pca03400
]
Pcar_2051
Enzymes [BR:
pca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pcar_2051
Messenger RNA biogenesis [BR:
pca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pcar_2051
DNA repair and recombination proteins [BR:
pca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pcar_2051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DUF4031
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ABA89292
UniProt:
Q3A2W5
LinkDB
All DBs
Position
2388186..2390099
Genome browser
AA seq
637 aa
AA seq
DB search
MPAQTIHRCLQEKFGFSTFRPGQEAVIDSLLAGHSALAIFPTGGGKSLCYQLPALLMDGL
TLVISPLIALMKDQVDALRERGIMAARLDSSIGADEIRTIYRDLADGSLKILYIAPERLS
NERFLHRLQGRPIALLAVDEAHCISEWGHNFRPEYLKIARMAEELKVGRVLALTATATPD
VADDIRRAFHIADNDQIQTSFHRPNLHLTVSPCPAPQRRQQLLQRLRQRPVEPTIVYVTL
QKTAEQIAAFLADEGIRARAYHAGLKTEERTEVQNAFMADDLHVVVATIAFGMGIDKADI
RAIYHYNLPKTLENYMQEIGRAGRDGNDAHCEIFACADDLTVLANFSYGDTPVPDALASL
VEYLLDQSETFSVSHYELAGRFDIRPLVIATIFTYLELNGVLRATGPFYDSYKVRFNRSP
DKIIAGFDPQRGAFLRDLFATARPGRIWSHLTPDKSAAELNQPRSRITAAIGYLEEEGDL
TTQVTGLRHGYRFQTPDIDSPKLIADLQQTFAERERRNISRLHGVLAYAEQKSCLTRQLL
DYFGEKTDADCNDCSRCQGGERQPLPRTAPLAPGTAEAEIGRRVRAENHPALSHPRQLAR
FLCGISSPAATRAKLSRHPDFGALGEIPFQKILAMLT
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgccggcacagacaattcatcgctgtctacaggagaagttcggtttttccacgtttcgg
ccggggcaggaggccgtcatcgacagcctgttggcggggcattcagctttggcgattttc
cctaccggcggcggcaaaagcctatgttatcaattaccggccttacttatggacggcctg
accctggtcatttctcctttgatcgcgctgatgaaagatcaggtcgacgcattacgggag
cgcggaatcatggccgcccgcctcgattccagtatcggtgccgacgaaatacggaccatt
tatcgcgatctggccgacggcagcctcaagattctctatatcgcccccgaacgactgtcc
aacgagcgtttcctgcaccgtcttcagggccgtcccatcgctttactggccgtcgatgaa
gcccattgcatctcggagtgggggcacaacttccgccccgagtatctgaaaatcgcccgc
atggcggaagaactgaaggtcggcagggtcctggcccttaccgccaccgcgacaccggac
gtcgccgacgatatccgccgggccttccatattgccgacaacgatcagatccagaccagt
tttcaccgccccaacctgcatctgaccgtttctccctgcccggccccgcaacgccgtcaa
cagctgctgcaacgcctccggcaacgaccggtcgaaccgaccattgtctacgtcaccctg
caaaaaaccgccgagcaaatcgccgcatttcttgccgacgaagggattagggcccgggcc
tatcacgcgggcctgaaaaccgaagagcggacggaagtgcagaatgccttcatggccgac
gatctgcacgtggtcgtcgctaccattgctttcggcatgggaatcgacaaggcggacatc
cgcgccatctaccattacaacttgcccaagaccctggaaaattacatgcaggaaatcggg
cgcgccggccgcgacggcaatgatgcccactgcgaaattttcgcctgtgcggacgacctg
accgtgctggccaacttcagttacggcgacacgcccgttcccgacgccctcgcctcgctg
gtggagtacctgctcgaccagagcgaaaccttcagcgtctcccactacgagctggccggg
cgtttcgatattcgtccgcttgttatcgccaccatcttcacttacctggagttgaacggc
gtactgcgcgctaccggacctttctacgacagctacaaggttcgcttcaaccgcagtccc
gacaagatcatcgccggcttcgatccgcaacgcggcgcctttttgcgggatctcttcgct
acagctcggcccggcaggatctggtcccaccttacccccgataaaagcgctgccgaactg
aaccagccccgcagccggattacagccgccatcgggtacctggaagaagaaggcgatctg
acgactcaggtcaccggcctgcggcacggataccggttccagaccccggacatcgactcc
ccaaagctgatcgccgatctgcagcaaacctttgcggagagggaacgacgcaatatttcc
cggctgcatggggttctcgcatatgccgaacaaaaaagctgcctgacccgccagctgctg
gattatttcggtgaaaaaaccgatgccgattgcaacgactgcagccgctgccagggggga
gagaggcaacctctgccgcgcaccgccccccttgctccgggtaccgccgaggccgaaatc
ggtcggcgggtccgggccgaaaaccatccggccctatcccatccgcgccagttagcccgc
ttcctttgcggcataagcagcccggccgccacacgcgccaaacttagccggcatccggat
ttcggtgccctgggagagattccattccaaaaaatattggcgatgttgacctga
DBGET
integrated database retrieval system
