Syntrophotalea carbinolica: Pcar_2350
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Entry
Pcar_2350 CDS
T00285
Symbol
rny
Name
(GenBank) endoribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pca
Syntrophotalea carbinolica
Pathway
pca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pcar_2350 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pca03019
]
Pcar_2350 (rny)
Messenger RNA biogenesis [BR:
pca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pcar_2350 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
CO4A-B_CUB_C
Motif
Other DBs
NCBI-ProteinID:
ABA89589
UniProt:
Q3A218
LinkDB
All DBs
Position
complement(2760139..2761701)
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AA seq
520 aa
AA seq
DB search
MSIEIQWIGIGAAFLVGAIGGALVRRKVAATQLAEAKRMADQILSEATKEADILRKEAEI
QKKDALLEAKTAWEQEAREMRRELQAQEKRLVQREENLDRKVAQVDARDEEFGQREKRLS
QQESRIRSWEKEADALVRQQRERLEELAGLGAEEAKAQLMEQMESEARHECAKKIKQIED
EAKEAADKKAQEILALAVQRYAGDFVAESAVSVVPLPNDEMKGRIIGREGRNIRAIEAAT
GIDLIIDDTPEAVIISGFNPVRREVARLALERLIGDGRIHPSRIEEAVNKATQDVDNAIR
EAGEQATFDVGVHGIHPEIIKLIGRLRYRTSYGQNVLQHSIEVAFLCGIMAAELGINVKQ
AKRAGLLHDIGKAVDHEVEGSHAVIGANLARKYGESAKIVHALAAHHEDEKPSTVLAVLV
QAADALSGARPGARREMLETYVKRLQDLERIGTSFAGVTNCYAIQAGREIRVMVSSEEVS
DVQSHTLAKQIARQIEEEMAYPGQIKINVIRETRAVEFAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
ttgagtatagaaattcagtggataggaatcggcgcggcatttttggtcggtgccatcggc
ggggcacttgtacgccgcaaggttgcggctacccaattggctgaagcgaaaagaatggct
gaccagattctgtcggaagccaccaaggaagcggatattctccgcaaagaagccgaaatt
cagaaaaaggatgccttgctggaagcaaagacggcctgggagcaagaggcccgtgagatg
cgccgggaattgcaggcacaggagaagcgtcttgtgcagcgcgaggaaaatctggatcgc
aaggttgcgcaggtcgatgcgcgcgatgaagagttcgggcagcgtgaaaagcgtctttcg
caacaggaaagccgcattcgcagctgggaaaaggaagcggatgctctggtccgccagcaa
cgtgagcggctcgaggagctggccgggttgggcgccgaggaggccaaggcgcaactcatg
gagcagatggagagtgaggcgcggcacgagtgcgccaaaaaaatcaagcagatcgaggat
gaagccaaggaagccgcagataaaaaagcgcaggagattctggctctcgccgtgcaacgc
tatgccggtgattttgtcgcagaaagcgccgttagcgtcgtgccgttgcccaatgatgaa
atgaaagggcgcattatcggtcgggagggacgtaatatccgtgccattgaagcggccacc
ggtatcgatctgattatcgatgatactcccgaagccgttattatttccggatttaacccc
gttcggcgcgaggttgcacggttggctctggagcggctcatcggggatggtcgcattcat
ccgtcgcgtatcgaggaagcggtaaacaaggccacccaggatgtcgacaacgccattcgc
gaggctggcgaacaagcgactttcgatgttggcgtgcatgggattcatcccgagattatc
aagcttatcgggcgcctgcgctatcgtacttcttacgggcagaacgtgcttcagcattcc
atcgaagttgctttcttgtgcggtatcatggccgccgagcttggcatcaatgtcaagcag
gccaagcgggccggattgctgcatgatatcggcaaggccgtcgaccacgaagtggaaggt
tcgcatgccgtcatcggggccaatcttgcgcgtaagtatggcgaatcggccaagatcgtt
catgctctggctgcccatcatgaggacgagaagccttcgacggttcttgccgtgctggtt
caggcggccgatgctctctccggtgcgcgccccggtgcccgtcgtgaaatgcttgaaacc
tacgttaagcgacttcaggacttggagcgtatcgggacctcctttgccggcgttaccaac
tgttatgccatccaggccggtcgtgaaatccgggttatggtttccagcgaagaagtgtcg
gatgttcagtcccataccctggccaagcagattgcgcgacagatcgaggaggagatggct
tatcccggtcagatcaagattaacgtcattcgcgaaaccagggcggtggagtttgccaaa
tag
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