Syntrophotalea carbinolica: Pcar_2558
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Entry
Pcar_2558 CDS
T00285
Name
(GenBank) sensor diguanylate cyclase/phosphodiesterase, 5TM, PAS, PAS and PAS domain-containing
Organism
pca
Syntrophotalea carbinolica
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_3
PAS
5TM-5TMR_LYT
PAS_4
PAS_8
Diguanyl_cycl_sensor
DUF6162
Cpta_toxin
Motif
Other DBs
NCBI-ProteinID:
ABA89796
UniProt:
Q3A1G1
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All DBs
Position
3002028..3005213
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AA seq
1061 aa
AA seq
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MDNVFLALIQNAALLLAMAFIYDMMTSRYRLKHRLIVQICVGISLGLLSIILMLSPWQYI
PGIVFDTRSVLLGISGLFFGAVATSVAMLMAAAFRLFQGGAAAWIGVGVIFASGIVGIYW
KYRNRKSAEQLTWWQLYGFGVLVHLIMLAFMLLLPWQTAFRVLHHISLPVLLIYPLATAM
LGSLMLKRQRRDQISKALQTSEERLRMALKASKQGLYDLNVQSGNMIVNAEYALILGYDP
QNFRETNGDWIARMHPEDRSAVLAVYRNYLAGKTEEFRAEFRQRTRCGQWKWVLSMGKIV
ERDTHGQPLRMLGTFSDITERRQSEEQTRKAEREKADLLEEAQQARLTLQRLFEEQTLAS
AEIERTSRLLAEVLNAASEVSIIATDPRGIITVFNRGAEKMLGYSAEEMVGRETPTVFHL
ASELQTRYTELGADRGTPIKDFADYMAHATTADAEHREWTYTSKQGEHISVSLVITAMRS
PAHGIVGYLGIAQDITERKRQENTLRKLSQVVEQSPTAVILTDPQGNIEYANPKFTQITG
YSLTEVHGKNPRLLKSGETSAEEYRDLWTTITAGREWHGEFHNKRKDGSLFWEHASISPV
RNDAGDISHFLAIKEDITDRKRYEEQLQHLATHDNLTGLANRALLQDRLEQSILFAKRSG
RLVAALLLDLDRFKIINDSLGHSFGDRLLQIAADRLRESVRGADTVARLGGDEFVILLAE
VANEEDVGKVAKKILDRITAPFQIADREITVTASLGISIYPQDGEDEETLIRNADIAMYQ
AKEEGNAFRLYAPEMNIVVHEAMEMETDLRRALDRGELLLHYQPKIDLDSGKITGAEALV
RWQHPVRGMIAPGMFIPLAEETGLILPIGEWVLENICLQIKSWQTQGFPLVPIAANLSAR
QFRNDELIATIQRILQDTGLPPHLLELELTESMIMRNVQTAAETMQELNALGVSLALDDF
GTGYSSLNYLRRFPVDCLKIDRSFISDVADDPSAAAVATSIIAIAHSLGLQAVAEGVETE
EQLEFLRQCACDSYQGYLYSAPLAVEEFTAMLRQESTRTAP
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggacaatgtctttcttgccctgattcaaaacgccgccctgctgctcgccatggcattc
atctacgatatgatgaccagccgctatcgcctcaagcaccggctgatcgtacagatctgc
gttggcatatccctcggcctgctcagtatcatcctcatgctctctccctggcagtacatc
ccaggcattgttttcgatacccgctcggtgctgttggggatatcggggctgtttttcggg
gctgtcgccaccagcgtggccatgctcatggccgccgcctttcgcctcttccagggcggg
gccgccgcctggatcggggtgggcgtcatctttgcctcggggatcgtgggcatctactgg
aaataccgaaaccgaaaatcggccgaacaactcacctggtggcagctctacggtttcggc
gtgctcgtgcatctcatcatgctggccttcatgttgctgctgccctggcagaccgcgttt
cgcgttttgcatcatatctccctgcctgtccttcttatctaccctctggctaccgccatg
ctcggttccctgatgctcaaacgtcaacgccgagaccagatatccaaagccctgcagacc
agcgaggaacggctgcggatggccctcaaggcgtccaagcagggcctctacgatctcaac
gtgcaatccggcaatatgatcgtcaatgccgaatatgccctgatcctcggctacgatccc
cagaactttcgcgagaccaacggggactggatagcacgcatgcaccccgaggaccggtcg
gcggtactggcggtttaccgcaattatcttgccggcaaaacagaggaattccgtgccgaa
ttccgccagcggacgcgctgcgggcaatggaaatgggtgctgtccatgggcaagatcgtc
gagcgggatacccacgggcagccgttgcgcatgctcggaaccttttccgatatcaccgaa
cgccgccagtccgaggaacagacccgcaaagcggaaagggaaaaagccgacctgctcgaa
gaagcccagcaggctcgcctgactttgcaacgtctgttcgaagaacaaaccctggcctcg
gcggaaatcgagcgtacgtcacgtctactggcagaggttctcaacgcggcgtccgaagta
tccattattgccaccgatccgcgaggaatcattaccgtcttcaatcgcggggcggaaaag
atgctgggctactcagccgaagaaatggtcggcagagaaacgcccacggtatttcacctg
gcatcggaactgcaaacccgctatacggaactcggcgccgaccgcggcacgcctatcaag
gattttgccgactacatggcccacgccaccaccgctgacgccgaacatcgcgaatggaca
tatacaagcaaacagggcgaacacatttcggtgtctctggtcattaccgccatgcgctcc
cccgctcatggaattgtcggctacctcggcatcgcccaggacatcacggaacgcaagcgc
caggaaaatactttgcgcaaactctcccaggtggtggagcaaagtccgacggccgtcata
ctgaccgacccgcaggggaacatcgaatatgccaaccccaaattcacccagatcaccggc
tattccctgacggaggtccatggcaaaaacccccgcctgctcaaatccggtgaaacatcc
gccgaggaataccgcgatctatggacgaccatcacagcgggcagggagtggcatggcgaa
tttcataacaaacgtaaagacggatctcttttctgggagcatgcctccatctccccggtg
cgcaacgacgcgggcgacatcagccatttcctggccatcaaagaagacatcaccgaccgc
aaacgctacgaggagcaactgcagcacctggccacccacgacaacctgaccggcctggcc
aacagagccttgctgcaggatagacttgagcaatcgatcctgttcgccaaacgctcgggg
cgattggtagccgccctgctgctcgatctcgaccgcttcaaaatcatcaacgacagcctt
ggtcacagttttggcgacaggctgctgcagattgcggcggaccggttgcgggaatccgtg
cgtggagccgataccgttgcgcgtctgggcggggacgaattcgttattctgctggccgag
gtggccaatgaagaggacgtgggcaaggtggcaaaaaaaatcctcgacagaattacggca
ccgtttcagattgccgatcgcgagatcactgtcacggcaagtttgggcatcagcatctac
ccgcaggatggcgaagacgaggaaaccctgatccgcaatgccgatatcgccatgtaccag
gccaaggaggaaggaaacgccttccgcctctacgcgccggagatgaatatcgttgttcat
gaagccatggagatggaaacggacctgcgccgggccctggatcgtggcgagttactgttg
cattatcaacccaagatcgacctggatagcggtaaaatcaccggagcggaagctctggtg
cgatggcaacacccggtacgcggcatgattgcgcccgggatgttcatccccctggcggaa
gaaaccggccttatcctgccgatcggagagtgggttctggaaaacatctgtttacagata
aaaagctggcaaacccagggattccccctcgtccccatcgctgcgaacctgtcggcgcgc
cagttccgtaacgatgagctgatcgccaccatacagcggattctgcaggacaccggcctt
cctccgcatctgctcgaactggaattgaccgagagcatgatcatgcgcaacgttcagacc
gcggcggaaaccatgcaggaattaaacgccctcggcgtcagtctggccctggatgatttc
ggtaccggatattcatccctgaattacctgcggcggtttcccgttgactgtctcaagatc
gatcgctcttttatcagcgatgtcgcggacgatcccagtgcagcggccgttgccaccagc
atcatcgccatcgcccacagcctgggcctgcaggccgtggcggaaggtgtggaaaccgaa
gaacaactcgaatttttgcgccaatgcgcctgcgacagctatcagggatatctttacagc
gcccccctcgccgtcgaggaatttacggccatgctgcgccaggagtctacgcgcaccgcc
ccctga
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