Syntrophotalea carbinolica: Pcar_2835
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Entry
Pcar_2835 CDS
T00285
Symbol
rtcB
Name
(GenBank) RNA 2',3'-cyclic phosphate--5'-hydroxyl ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pca
Syntrophotalea carbinolica
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pca03016
]
Pcar_2835 (rtcB)
Enzymes [BR:
pca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pcar_2835 (rtcB)
Transfer RNA biogenesis [BR:
pca03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pcar_2835 (rtcB)
Prokaryotic type
tRNA splicing ligases
Pcar_2835 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABA90070
UniProt:
Q3A0N7
LinkDB
All DBs
Position
complement(3313396..3314808)
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AA seq
470 aa
AA seq
DB search
MKARELQNLGFPRGEIIQQALTTVAGAAQAGVGKMEIRQTMRTMAEDPETHLNDPHFGDF
AALWLVASSNGTCFKEREEPAPWRQWGAGLQQGAIEQMRNACRLPIAVAGALLPDAHQGY
GLPIGGVLATRGAVVPYAVGMDIACRMKLTVLDMPVEDLTRRQQCLMRAIEEETRFGVGA
TFRRRREHGVMDDGWGVTRVTSSLKDKAWGQLGTSGSGNHFVEFGELVLERDELGLAAGT
YLALLSHSGSRGSGNAVATHYSGVAQQLHPELPKELRHLAWLDLESGDGQEYWQAMELMG
RYAAANHELIHRCIAENLGAQVLLDVENHHNFAWKEMHGEQEVIVHRKGATPAANGMLGI
IPGSMATPGYLVRGKGSTASLQSASHGAGRKMSRKAAREQCTWAEARAFLAERGVTLMSA
GLDEVPMAYKDIDTVMEAQADLVDILAQFNPRLVKMAGGEDPRIKTRRFR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcacgtgaattgcaaaacctgggattcccccggggagaaatcatccaacaggcc
ctgaccaccgtggcaggtgccgcccaggcgggagtggggaaaatggagatccgtcagacc
atgcgaacaatggcggaagatccggaaacccacctgaacgatccgcatttcggtgacttt
gccgctctgtggctggtggcttcatccaacggtacctgtttcaaggagcgggaagaaccc
gcgccctggcgccagtggggtgcggggctgcagcagggtgccatcgaacagatgcggaat
gcctgccggttgccgatcgcggtggcaggcgccctgttgcccgacgcccatcagggttac
ggtctgcccatcggcggggtacttgccacgcgcggggcggttgtcccctatgcggtgggg
atggatatcgcctgccgtatgaagctgaccgtgctcgatatgccggtcgaggatctgacc
cggcggcaacagtgcctgatgcgcgccatcgaagaagaaacccgcttcggtgtgggggcg
accttccgccggcgccgtgagcatggggtgatggacgacggctggggcgtcaccagggtg
acctcctccctgaaggacaaggcgtggggacaactgggtaccagcggcagcggcaaccat
ttcgtcgaattcggcgaactggtgctggaacgggacgaactgggccttgccgccgggacc
tacctggcgctgctcagccatagcggcagccgcggcagcggcaacgccgtcgccacccat
tacagcggcgtggcgcaacaacttcatccggaactgccgaaggaattgcggcacctggcc
tggttggatctagaaagcggggatgggcaggagtactggcaggcgatggaactcatgggg
cgatacgccgctgccaaccacgagctgatccaccgctgcatcgccgaaaacctgggagca
caagtgctgctcgacgtggaaaatcaccataatttcgcctggaaggaaatgcacggcgaa
caggaggtgatcgtccaccggaaaggggcaacccccgccgcaaacgggatgctcggaatc
attcctggttccatggctactcccggctatctggtgcggggcaagggctcaaccgcctcg
ctgcagtccgcatcccacggggcgggacgcaaaatgagccgtaaagcggctcgcgagcaa
tgcacctgggccgaagctcgtgcgtttctcgccgagcgcggggtgaccctgatgtcggct
ggtctggacgaagtccccatggcctacaaggacatcgacaccgtcatggaggcccaggcc
gatctggtcgatatcctggcacaattcaatcctcgtctggtcaagatggccggaggagaa
gacccacggataaagactcgcaggttccggtaa
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