Pseudomonas canadensis: V6L78_02065
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Entry
V6L78_02065 CDS
T10710
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcaa Pseudomonas canadensis
Pathway
pcaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6L78_02065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcaa03019
]
V6L78_02065
03400 DNA repair and recombination proteins [BR:
pcaa03400
]
V6L78_02065
Enzymes [BR:
pcaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6L78_02065
Messenger RNA biogenesis [BR:
pcaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6L78_02065
DNA repair and recombination proteins [BR:
pcaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V6L78_02065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WWL84711
LinkDB
All DBs
Position
complement(474681..476618)
Genome browser
AA seq
645 aa
AA seq
DB search
MHDTLQQVFGYPQFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVS
PLLALMQDQLGFLQRHGISAGSIDSAQSREDANEVMARARSGELKILMISVERLKNERFR
NFLQSVRISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADM
QAKFAIAPSDVVTTGFYRPNLNLLVEPVSGADKRRRLVQWMSERVDQPSIVYVTLQKTAE
QIADHLNRNGIQAEAYHAGLPHDKREGIQQRFMGGRSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQEGIRRVLEELQ
AARGDGQWEFLLRSLSDHSNIRELPLKTLLVQLELKGVIAPRYAFYAEYRFKYLIEPEAL
LARFSGERQQFVAAIIQVCKRAKTWATVDFDALYQQHNAERSRVVKALDYFQEQGLIELE
SKQMTEVYSLLDTAFDPDVLSKELYTGFKQHEVGEVARIHAMLDLFATEHCLGQRLAQYF
GDENAPQRCGHCSVCHGNVAHLPPPPGLPPLVDKNFMGLCGDFIHRHHEHTGHLPGAERL
TRFLGGISVPLFTKLKARGIPGFAALEDYPYAEVREWAQAHLNDL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctccagcaggtttttggttatccacagtttcgtctgggccaggaagag
acagtcagtgccgtactggccggccgttcggcagcggctattttcccaacgggttcgggc
aagtccctgtgctaccaattgtcggcggtgttgctgccgcacctcacgctggtggtgtcg
cccctgttggcgctgatgcaggaccagttgggtttcctgcagcgccacggcatttcagcg
ggcagtatcgattcggcccagagccgcgaggacgccaatgaggtgatggcccgcgcgcgt
tcgggcgagttgaagatcctgatgatttccgttgagcgcctgaagaacgagcgctttcgt
aacttcctgcaaagcgtgcggatctcgctgttggtggtggacgaggcgcactgtatttcc
gagtggggccacaacttccgtccggactatttgaagctgccggactaccagcgtcagttc
aatatcccacaagccctgctgttgacggctacagcgacgcccaaggtgattgccgacatg
caggcgaagttcgccattgcgccgagcgatgtggtcaccacgggcttctaccggcccaat
ctcaatttgttggtggagccggtcagcggtgcggacaagcgtcgacggctggtgcagtgg
atgagcgagcgtgtcgatcagccgagtatcgtctacgtcaccctgcagaaaaccgccgag
cagattgccgatcatttgaaccgcaacggcatccaggccgaggcgtatcacgccggtttg
cctcacgataagcgcgagggtatccagcagcgtttcatgggcgggcgctccaattgcatc
gtcgcgaccatcgcgtttggcatgggcatcgacaaaagtgatatccgcaatgtggtgcac
ttcgacctgcccaagtccatcgagaactacagccaggaaatcggccgcgcggggcgtgat
gggcaaccgtccgattgcctggtgttggccaaccgtgacagcctcaatgtgctggaaaac
ttcgtgtacggcgatacgccggagcaggagggcattcggcgggtgctcgaagaattgcag
gccgcgcgcggcgatgggcagtgggagtttttgctcaggtccttgtcggaccacagcaac
atccgcgagctgccgttgaagacgctactggtgcagttggagctcaagggcgtgattgcg
ccgcgctatgcgttttatgcagagtaccgtttcaagtacctgatcgaacctgaggctttg
ctcgcgcgcttctctggtgagcggcagcagttcgtcgcggcgatcatccaggtgtgcaag
cgggccaagacctgggcgacggtggattttgacgcgctttatcaacagcacaatgccgaa
cgcagcagggtggtgaaggcgctggattacttccaggagcaaggcctgatcgagcttgag
agcaagcagatgacggaggtctatagcttgcttgataccgcgtttgaccctgatgtattg
agcaaagagttatacacaggcttcaagcagcatgaggtgggcgaagtcgcacggattcac
gccatgctcgatctgttcgccaccgaacactgcctgggtcaacgcctggcgcagtatttc
ggcgatgagaacgcgccccagcgctgtgggcactgctcggtgtgccacggcaacgtggcg
caccttccgccgccgccaggtttgccgccgcttgtggataaaaacttcatggggctttgc
ggtgattttatccacaggcatcatgaacacaccggccacttgccgggagcggaacgcctg
acgcgtttcctcggcggcatcagtgtgccgttattcaccaagttgaaggcgcggggcatt
ccgggctttgctgcgttggaggattatccgtacgccgaggtacgcgagtgggcccaggcc
catttgaatgacctgtaa
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