Pseudomonas canadensis: V6L78_03320
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Entry
V6L78_03320 CDS
T10710
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcaa Pseudomonas canadensis
Pathway
pcaa02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V6L78_03320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcaa03021
]
V6L78_03320
Transcription machinery [BR:
pcaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V6L78_03320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
GerE
HTH_23
HTH_20
HTH_40
HTH_11
HTH_24
HTH_7
Trp_repressor
PhyR_sigma-like
TnsD
Annexin
HTH_Tnp_4
Phage_antitermQ
DUF2774
HAC6_helical
Motif
Other DBs
NCBI-ProteinID:
WWL84949
LinkDB
All DBs
Position
complement(753475..753981)
Genome browser
AA seq
168 aa
AA seq
DB search
MSPPSHTAAVQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQIVEPRD
YLATIARGLVIDRYRRHAIEQAYKQTLAERPEAIAISEEDKAIIIETLVAVDKALSALGE
RARRIFMLSQIEGLTYQQIADQLQVSLTTVKKHMIRALTECALIMASL
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
atgtcccctccttcacacacggctgcggtccagaacatctatgagcagcaccattcctgg
ctgcacgggtggctcaaagggaagttgcataacgcctgcgatgcggccgatgtggcgcac
gacacgttcgtgcgcatcctgggcgggcggcatgcggcgcagatcgttgaaccgcgagac
tatttggcgaccattgccaggggcttggtgattgatcgctaccgtcgacatgccatcgaa
caggcctataagcaaaccttggccgaacggcctgaagccatagccatcagcgaagaagac
aaagccatcatcatcgagacgttggtggctgtggataaagccttgtcggcactcggcgag
cgagcacggcggatattcatgctgtcgcagatcgagggcctgacttatcaacagattgcc
gatcagcttcaggtttcactgaccacggtgaagaagcacatgatccgtgcattgaccgaa
tgcgcattgatcatggccagcttgtaa
DBGET
integrated database retrieval system
