Pseudomonas canadensis: V6L78_04525
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Entry
V6L78_04525 CDS
T10710
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcaa Pseudomonas canadensis
Pathway
pcaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6L78_04525 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcaa03021
]
V6L78_04525 (rho)
03019 Messenger RNA biogenesis [BR:
pcaa03019
]
V6L78_04525 (rho)
Transcription machinery [BR:
pcaa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
V6L78_04525 (rho)
Messenger RNA biogenesis [BR:
pcaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V6L78_04525 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WWL85179
LinkDB
All DBs
Position
1013729..1014988
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgacctgctccagctggccgaagaa
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctccgctctgctgacgcctcctatcttgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgacctccgaaggaaggcgagcgttatttcgccctgctcaaggtcgacacgatcaac
ttcgatcgtcccgagaacgcgaaaaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggtaacggttccaccgaagacctgaccggtcgt
gtgatcgacctgtgcgccccgatcggcaagggccagcgtggcctgatcgtcgcaccgccg
aaagccggtaagaccatcatgctgcagaacattgcagcgaacatcgcacgtaacaatcct
gaagttcacctgatcgtgctgttgatcgatgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctccacgttcgatgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaagacgtg
gtgatcctgctcgactccatcacccgtctggcccgtgcctacaacaccgtgatccctagc
tccggcaaggtactgaccggtggtgtcgatgcccacgccctggagaaaccgaagcgtttc
ttcggcgccgcgcggaacatcgaagaaggcggctcgctgaccattatcgccaccgcactg
gttgaaaccggttcgaagatggatgaagtgatctacgaagagttcaagggtaccggtaac
atggaactgcccctggaccgtcgcatcgcggaaaaacgcgtgttcccggcgatcaacatc
aaccgttccggcactcgccgcgaagagttgctgaccgccgacgacgaactgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggatgaagttgcagccatcgagttcctggtc
gacaagttgaaaaccaccaagaccaacgacgagttcttcctgtcgatgaagcgtaagtaa
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