Pseudomonas canadensis: V6L78_05395
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Entry
V6L78_05395 CDS
T10710
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcaa Pseudomonas canadensis
Pathway
pcaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6L78_05395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcaa03019
]
V6L78_05395
Enzymes [BR:
pcaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6L78_05395
Messenger RNA biogenesis [BR:
pcaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6L78_05395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WWL85344
LinkDB
All DBs
Position
complement(1187797..1189680)
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AA seq
627 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGTV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGKEKSASSGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDV
DNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGAPRGGQPQGGRQNGPRNSSGGTTGTPP
AKRNGPRNGAPRDGQARREDSRSNNRRPARDDQPRSSEPAVQNPRGGPAPKIIHKESKAD
RFPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgccctcccgattctg
gagcggttgtttcccaatggtcatccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtactggtcctgacccccacccgcgaactcgcagcccaggtacacgacagcttcaag
ctgtatgcccgcgacttgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgcggcgtggacgtgctggtcgcgtgcccgggtcgtttg
ctcgacctgtgcggccaaggcagcgtcgacctgtcccacgtggaaatcctcgtactggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaagtcctcgcccgc
ctgccggccaaacgccagaacctgctgttctcggccacgttctcccaggacatcactgcc
ctggccggcaagctgctgcacaacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgagcaacgcgtcttccgcctgccagccagccacaagcgtgcgctgctg
gcccacctgatcaccgccggtgcgtgggaacaggtgctggtcttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctcaccgccgtcgccatccac
ggcaacaagagccagaacgcgcgcaccaaggccctggctgacttcaaggccggcaccgta
cgcatcctggtcgccaccgatatcgccgcccgcggcctggatatcgaccagttgccacac
gtggtcaacttcgagctgccgaacgtcgatgaagattacgtgcaccgtatcggccgcacc
ggccgtgccggtcgttcgggtgaagccatctccctggttgcgccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcgccgttgaggctgagaagcctgaagcgcgcgagcgtccggacgtgcgcaac
ccgcgcaacccacgcggtccgaagggcgatggcccgaacggcggcggtggtggcggcggt
cgtcgcgacaaaggcaaagacaaaggcaaggaaaaatccgcctccagcggccgtggcgaa
cgcccagcccgtgagcagaaaccccgtgaaggcaccccggcccgcgaacagcgacagccg
agccagccacctcgcgctgctgccgaccgcgctccggacgagttcctcgacgacgatgtg
gataacttcggtaaccgcgttgactacgtgccacaggccaaaccggcccaaggccgtggc
cgtcgtccaggtgccccggcacagggtgcaggcgcaggcgctccacgtggcggccagcca
caaggcggccgccagaacggcccgcgcaacagcagcggcggcaccaccggtacgccgcct
gccaagcgcaacggcccgcgtaacggtgcaccccgtgacggccaggctcgccgcgaagac
tcgcgcagcaacaaccgtcgcccagcccgtgacgaccagcctcgctcctccgaaccggcc
gtgcagaacccacgcggtggcccggcgccaaagatcatccacaaggagtcgaaggctgac
cgcttcccgacacccgagcagttggatcaactgccaggccgtcctcgtggtgaaaaacca
gcgttgctgacgcgcaaccgctga
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