Pseudomonas canadensis: V6L78_07030
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Entry
V6L78_07030 CDS
T10710
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pcaa Pseudomonas canadensis
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcaa03000
]
V6L78_07030
Transcription factors [BR:
pcaa03000
]
Prokaryotic type
Helix-turn-helix
Other families
V6L78_07030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
HTH_8
Sigma54_activ_2
AAA_lid_14
HTH_32
HTH_50
AAA_5
HTH_7
HTH_17
HTH_AraC
HTH_23
RWP-RK
HVO_A0261_N
HTH_22
AAA_2
PAS_9
PAS_8
HTH_30
HTH_Tnp_1_2
DUF1492
PAS
dnstrm_HI1420
AAA
nSTAND3
HTH_IclR
HTH_11
TrmB
TIP39
DUF7317
Mga
ANT
Diguanyl_cycl_sensor
HTH_20
Motif
Other DBs
NCBI-ProteinID:
WWL85649
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Position
1518445..1520334
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AA seq
629 aa
AA seq
DB search
MHNDHFSRHAQQVLTVAHGRDPSSDPSIARSWLRCLEDYHLDPAQTIAPTVLEHGRLLES
RERLQQVLHIAGSEMNSLHQQLSGAGHAVLLTDARGVILNCVTAPSERKIFERAGLWLGA
DWSEACEGTNGIGTCLVERQSLTIHRDEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSA
REAVSRQSQFHTMALVNLSAKMIESCYFLRHFENHWLLRFHLQAESVGLFSEGLLAFDGE
GRICAVNQSALNLLGQLRGGLLGQPVEGFFDCSLDQLLGRASANATASWPLRTRDGRHLF
AALRGQARSASAPIAKPEPSRLPGICLGDPAMQNDFRKALRVFERDVPLLINGETGSGKE
AFAKAVHYASQRADQAFVALNCAAIPESLIESELFGYRGGSFTGARKEGMQGKLQQADGG
TLFLDEIGDMPLALQTRLLRVLEDRLVVPIGGEPQAVNVRVISATHRNLLERVQNGSFRE
DLYYRLNGLEVGLPPLRERRDRPQLLDFLLAEESAGQVVSLEFGARQALLAFAWPGNVRQ
MRTVLRTVVALCDDGRIGLSDLPAVFRQASVQTVIKSPLEDAERQTLLATLERQHWHMTQ
VAEHLGVSRNTLYRKLRKHGITRAAVGES
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacgatcatttcagtcgccatgcccagcaagtcctcaccgtggcgcatggccgc
gacccgtccagcgatccgtccatcgcccgctcctggctgcgttgcctggaggactaccac
ctcgaccctgcgcaaaccattgcacccactgtgcttgaacatggtcgcttgctggaaagc
cgcgagcgcctgcaacaagtgctgcacatcgccggcagtgagatgaatagcctgcatcaa
cagctctccggcgctgggcatgctgtgttgctcacggatgcacgcggtgtgatcctcaac
tgtgtcaccgcgccgtccgagcgcaagatcttcgagcgtgccgggttgtggctgggtgcc
gactggagtgaggcctgcgaaggcaccaacggcatcggtacctgcctggtagagcgccag
tccctgaccattcatcgcgacgagcatttccggggacgccacacgggcctgacttgttcg
gcgagcccggtgttcgaccctcatggggatctgctggcggtgttggatgtgtcctcggcg
cgggaggcggtgtcgcgccagagccagttccacacgatggcgctggtgaacctgtcggcg
aagatgatcgagagttgttactttctgcgtcatttcgaaaaccattggctgctgcggttt
catctgcaggcggagtcggtggggttgttcagtgaagggctattggcgttcgatggcgaa
gggcgaatttgcgcagtgaaccaaagtgccctgaacctccttgggcagttgcggggcggt
ttgctgggacagcctgtggagggttttttcgactgttccctggatcaattgctcggccgc
gccagcgccaatgccacggccagttggccgttgcgcacgcgggatggccggcatctgttc
gccgctttgcgtgggcaagcgcgcagcgcgtcagcccccatcgccaagcctgagccttca
cggctgcccggcatctgcctgggcgacccggcgatgcaaaatgattttcgcaaggcactg
cgggtgttcgagcgggatgtgccgctgttgatcaatggcgagaccggctccggcaaggaa
gcctttgccaaggccgtgcactacgccagccagcgcgctgaccaggcgtttgtggccctc
aactgcgccgccatcccggaaagcctgatcgaaagcgaactgtttggctatcgcggcggc
agctttaccggcgcgcgtaaggagggcatgcaaggcaagttgcaacaggccgatggagga
accttgttcctcgatgaaatcggcgacatgcccttggcgctgcaaacccgtctcttaagg
gtgcttgaggataggttggtggtgccgatcggtggtgagccccaggcggtgaacgtcaga
gttatcagtgccactcaccgcaatttactggagcgtgtgcagaacggcagttttcgcgaa
gatctgtattaccgccttaacggcctggaggtcggcttgccgcctttgcgcgaacgccgt
gacaggcctcagttgctggacttcctgctggcagaagagtccgccgggcaagtggtcagc
ctcgaattcggtgcgcgccaggcgttgctggcgtttgcctggccgggcaatgtccgccag
atgcgtacggtattgcgcacagtggtggcgctatgtgatgacgggcggatagggctgtca
gatctgccggcggtgttccgtcaggcatccgtgcaaacagtcatcaagtcgcctctggag
gacgccgagcgccaaaccctgttggcgacgctggagcgtcagcactggcatatgacgcaa
gtcgccgagcacttgggtgtcagccgcaataccttgtatcgcaagttacgtaagcatggg
atcacacgcgctgcggtaggggaaagttga
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