Pseudomonas canadensis: V6L78_12040
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Entry
V6L78_12040 CDS
T10710
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pcaa Pseudomonas canadensis
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcaa03009
]
V6L78_12040 (rlmD)
Enzymes [BR:
pcaa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
V6L78_12040 (rlmD)
Ribosome biogenesis [BR:
pcaa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
V6L78_12040 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
PCMT
Methyltransf_11
Methyltr_RsmB-F
Methyltransf_23
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_15
DREV
PDGF
Motif
Other DBs
NCBI-ProteinID:
WWL86586
LinkDB
All DBs
Position
2586137..2587489
Genome browser
AA seq
450 aa
AA seq
DB search
MAKHERGLRFQPTGGSRAPQIPVGKKQRLTIERLANDGRGIVFFEGRTWFVNGALAGEEV
EARVLGAHGKIVEARTERVFKASELRRPAPCAHVGRCGGCSVQHLPHGEQLALKQRMLAE
QLSRVAGVEPQEWAAPLSGPEFGYRRRARVAVRWDAKAKQLEVGFRAVASQDIVAIDDCP
VLVQALQPIMQRLPNMLRRLSKPQALGHVELFSGTSIAVLLRHMAPLSEADLQVLKEFCA
FHEAQLWLHGEGQPEPVEVDSVLGFRLEQWGLELAYRPGDFVQVNAGVNEAMVAQALEWL
APQPDERVLDLFCGLGNFALPLARQVREVVAVEGVQTMVDRAAVNAVSNDLHNAQFFQAD
LSQPLTDAEWAKQGFSAVLLDPPRDGALEVVRKLATLGAKRLVYVSCNPATLARDTVELV
KQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcacgagagaggcctgcgcttccaaccgacgggcggcagccgggccccgcag
atccctgtgggcaagaaacaacgcctgaccatcgagcgcctggccaatgacggcaggggc
attgtgttctttgaaggccgcacctggttcgtgaatggcgcgctggccggcgaagaagtt
gaagcgcgagtgttgggggcccacggcaagatcgtcgaggcgcgcaccgagcgcgtgttc
aaggccagcgaactgcgccgcccggcgccgtgcgcccatgttggccgctgcggcggttgc
agcgtgcagcatttgccccacggcgaacagcttgccctgaaacagcgcatgctcgccgag
caactgtcccgtgtggccggtgtcgaaccgcaagagtgggccgcaccgttgagtgggccg
gagttcggctaccgacgccgcgcccgtgtcgccgtgcgctgggatgccaaggcgaagcag
ctggaagtaggttttcgcgccgtggccagccaggacatcgttgccatcgacgattgccca
gtgctggtacaggccttgcaaccgatcatgcagcgtctgccgaacatgttgcggcgcttg
agcaaaccacaggctttggggcatgtggagttgttcagcggtacgtccatcgccgtgttg
ctgcggcacatggcgccgttgtcggaagcggatctgcaggtgttgaaggaattctgcgct
ttccatgaagcccaattgtggctgcatggcgagggtcaacctgagccggtcgaagtcgat
tcagtcttgggttttcgattggaacagtggggtctggagctggcataccgacctggcgat
tttgtgcaggtcaacgccggggtcaacgaggctatggtcgcccaggccctggaatggctg
gcgccacaacccgacgaacgggtgctggacctgttttgcggcctgggcaacttcgccctg
ccactggcgcgccaggtgcgtgaagtggtggcggtggaaggcgtgcagaccatggtagac
cgcgcggccgtcaacgccgtcagcaacgatttgcataatgcgcagttttttcaggccgat
ttgtcccagcctttgactgacgcggaatgggccaaacagggcttttctgcggtactcttg
gacccaccccgtgatggtgccctggaggttgtgcgcaagctcgcgaccctgggagccaag
cgtctggtgtatgtgtcctgcaatcctgccacgctggcgcgggatacggttgagttggtc
aagcaaggctaccggctaaaacgtgccgggatcctcgacatgtttccgcaaaccgcgcat
gtcgaggccatggcgttatttgaagcgggctag
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