Pseudomonas canadensis: V6L78_16210
Help
Entry
V6L78_16210 CDS
T10710
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pcaa Pseudomonas canadensis
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcaa03000
]
V6L78_16210
Transcription factors [BR:
pcaa03000
]
Prokaryotic type
Helix-turn-helix
Other families
V6L78_16210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_30
AAA_5
nSTAND6
AAA_2
HTH_7
HTH_23
AAA_3
AAA
HTH_28
Mg_chelatase
AAA_7
HTH_22
HTH_10
AAA_16
HTH_psq
HTH_20
PAS
HTH_Tnp_1
DUF2089
dnstrm_HI1420
nSTAND3
HTH_11
MCM
HTH_38
AAA_14
HTH_17
Motif
Other DBs
NCBI-ProteinID:
WWL81467
LinkDB
All DBs
Position
complement(3454244..3456061)
Genome browser
AA seq
605 aa
AA seq
DB search
MAEPLAHDTLIQESWRRCRAFGLDHQSTPSFDQLPAEGISQLLESQHSLVQTTHQEVLPY
YENILSNSNCLIMLADNQGQVLTSWGTQRFIEPKLARGFNPGASWMERSSGTNAIGTALA
CAQAVHIEHDEHFLKANRFMTGSAAPIFDAQREIIAVLDVSSDSYLPPSHTLGMVKMMSQ
TVENRLILNLFRGEHFQLTFNTGLSNLDSQWAGLLIFDESGQVLSANRRADNLLGISLSR
VMIDSLFKVSLLELLNQPEGLPFSLQAAGRNRFQCLLRRPKQVPVQARVFTEPTPPKPAS
IGLKTLHFGDVRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRSQKAFIA
VNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPLPTQARLL
RVLQERCVQPVGSSELFPVDLRIISATNRALRELVQAGRFREDLYYRIGGLTLELPPLRE
RTDKQALFQQLWQQHREPTQWAGLSAEVLALFEQHPWPGNLRQVSSVLQVALAMAEEQPI
RAEHLPDDFFVDLKVEPPLPASEYLDDSIDLNQRLKAAGGNISHLARELGVSRNTLYKRL
RQHES
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccactggctcacgacacccttatccaggaatcctggcgccgctgccgcgcc
ttcggcctggaccatcagagcacgcccagcttcgaccaactccccgccgaaggcatcagc
caattgctggaaagccagcattcgctggtgcagaccacccatcaggaagtactgccctac
tacgaaaacatcctcagcaattccaattgcctgatcatgctggccgacaaccagggccag
gtgctgaccagttggggcacccagcgttttatcgagcccaagctggcgcgcggcttcaac
cctggcgccagttggatggagcgctccagcggcaccaatgccatcggcaccgcgctggcg
tgtgcccaggcggtgcatatcgaacacgatgaacacttcctcaaggctaaccgcttcatg
accggctcggcggcgccgatcttcgatgcccagcgcgaaatcatcgcagtgctggatgtg
tccagcgacagctacctgccgccctcccacaccctgggcatggtcaagatgatgagccag
accgtggaaaaccggctgatcctcaacctgtttcgcggcgagcacttccaactgaccttc
aacaccggcctgagcaacctcgacagtcaatgggcgggcttgttgatttttgatgagagc
ggccaggtgttgtcggccaaccggcgtgccgacaacctgctgggtatcagcttgtcgcgg
gtgatgatcgacagtttgttcaaggtgtcattgctggagttgttgaaccagccggaaggg
ctgcccttctccctgcaagccgcgggacgcaaccgtttccaatgtttgttgagacgcccc
aagcaggtacccgtgcaggcacgcgtgttcaccgagccaacgccgccgaagcctgcgtcg
atcggtctcaagaccctgcactttggcgatgtgcgcgtggaaaaagccgtgcgccaggcc
gaacgtttactggagaaggacattccgctgctgatccacggcgagacgggcgtgggcaag
gaagtgtttgtcaaagctctgcaccaggccagttcgcgcagccagaaggcatttatcgcg
gtgaactgtgcggcgattcccgccgaactggtggaatcggaactgttcggctacgaaaaa
ggcgcctttaccggcgccaatcagaaaggcagcatcggcctgatccgcaaggccgacaaa
ggcacgctgtttctcgatgagatcggtgatatgcccctgccgacccaggcccgtttgctg
cgggtgttgcaggaacgctgtgtgcagccggtgggcagcagcgaattgttcccggtggac
ttgcgcatcatctcggccacaaaccgcgcgttgcgtgagctggtacaggccggacgtttc
cgtgaagacttgtactaccgcatcggcggcctgaccctggaactgccgccgttgcgcgaa
cggaccgacaagcaggcgctgttccagcaactgtggcagcagcaccgcgagccgactcaa
tgggcgggcctcagcgccgaagtgctggcgctattcgagcagcatccgtggccggggaat
ctgcgtcaggtgagcagcgtgttgcaggtggcgctggccatggcggaagaacaaccgatc
cgcgcagagcatctaccggatgatttctttgtggacttgaaggtggagccgccgctgccc
gccagtgaatacttggatgacagcattgacctgaaccagcgcttgaaggcggccggcggc
aacatctcccacctggcacgggagctgggggtgagccgcaataccctctacaaacgcctg
cgccagcacgaaagctag
DBGET
integrated database retrieval system
