Pseudomonas canadensis: V6L78_17100
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Entry
V6L78_17100 CDS
T10710
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
pcaa Pseudomonas canadensis
Pathway
pcaa02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
V6L78_17100 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pcaa02044
]
V6L78_17100 (tssC)
Secretion system [BR:
pcaa02044
]
Type VI secretion system
Imp/Vas secretion system core components
V6L78_17100 (tssC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
VMAP-M0
Motif
Other DBs
NCBI-ProteinID:
WWL81640
LinkDB
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Position
3644592..3646067
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AA seq
491 aa
AA seq
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MTTQQHSLPAQTADQYSILDNIVAQTLLSADDEAYGIAKRGVSAFIEELIKPQNRGEPVK
KRLVDRMIAEIDTKLSLQMDEILHHPDFQALEASWKGLQLLVDRTNFRENIKIELLNVSR
QDLLEDFEDSPEVIQSGLYKHIYSAEYGQFGGQPVGAIIANYFLSPSAPDVKLMQYASSV
ACMAHAPFIAAAGPAFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYIGLTVP
RFLLRTPYDPLECPVKTFAYQENVVNSHEHYLWGNTAYAFATRLTDSFARFRWCPNIIGP
QSGGAVEDLPLHHFHSMGEIETKIPTEVLVSDRREYELAQEGFIALTMRKGSDNAAFFSA
SSVQKPKHFGLSPEGKQAELNYRLGTQLPYMMVVNRLAHYLKVLQREQLGSWKERTDLEL
ELNKWIRQYVADQENPSAEVRGRRPLRAARIVVSDVDGEPGWYRVNLSVRPHFKYMGADF
TLSLVGKLEKE
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgacgacacaacagcactcactgcctgcacaaaccgctgatcaatacagcatcctcgac
aacatcgttgcccagactctgctgagtgcggacgacgaggcctatggtattgccaagcgt
ggcgtttcggcgttcatcgaagagctgatcaaaccgcagaaccgaggcgagcccgtcaag
aaacggctggtcgaccggatgattgccgagatcgacacgaagcttagtcttcagatggat
gagatcctgcaccacccggatttccaggccttggaagcttcctggaaaggcctgcagttg
ttggttgaccgcaccaacttccgcgagaacatcaagatcgaactgctgaacgtctctcgg
caagatctgctggaagatttcgaggactcacctgaagtgatccagtccggtctgtacaaa
catatctacagtgcggaatacggtcagtttggtggtcagccggtgggcgcaattatcgcc
aattactttctgtctcccagcgcccccgacgtgaagttgatgcagtacgcttccagtgtg
gcctgcatggcccatgcgccttttatcgccgctgcagggcctgcgttcttcgggttggaa
agtttcaccggtctgccggatctcaaagacctgaaggaccatttcgaaggccctcaattc
gccaaatggcaaagttttcgccaaagcgaagattcacgctatatcggcttgaccgtgccg
cgtttcctgcttcgtacgccctacgatccccttgaatgcccggtcaagacctttgcctac
caggaaaacgtggtcaacagccacgaacactacctgtggggcaatacggcctacgctttt
gccacacgcctgaccgatagtttcgcgcggtttcgctggtgcccgaacatcatcggcccg
caaagcggtggtgcggtggaagacttgccgttgcatcacttccatagcatgggtgaaatc
gaaaccaagattccgactgaagtcttggtttccgatcgccgggagtacgaactggcgcaa
gagggattcattgccctgacgatgcgaaagggcagcgacaacgcagcgtttttttccgcc
agttcggtccagaagccgaaacactttggtctcagtcccgaaggcaagcaggctgagctg
aattaccgtctgggcacccaattgccctacatgatggtagtgaatcgcctcgcccactat
ctcaaggtcctgcagcgtgagcaattggggtcgtggaaggagcgcaccgacctggagctg
gaactcaacaagtggattcgacagtacgtcgccgatcaggaaaaccccagcgccgaagtg
cgtgggcggcgccctttgcgtgcggcccgcatcgttgtcagtgatgtcgacggcgagccc
ggctggtatcgagtcaacctgagtgtgcgcccgcacttcaagtacatgggggcggatttc
acattgtccctggtcggcaagctcgaaaaagaatga
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