Pseudomonas canadensis: V6L78_18380
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Entry
V6L78_18380 CDS
T10710
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcaa Pseudomonas canadensis
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcaa03032
]
V6L78_18380
03400 DNA repair and recombination proteins [BR:
pcaa03400
]
V6L78_18380
Enzymes [BR:
pcaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
V6L78_18380
DNA replication proteins [BR:
pcaa03032
]
Prokaryotic type
DNA Topoisomerases
V6L78_18380
DNA repair and recombination proteins [BR:
pcaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
V6L78_18380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
PB1
Motif
Other DBs
NCBI-ProteinID:
WWL81880
LinkDB
All DBs
Position
complement(3927027..3928064)
Genome browser
AA seq
345 aa
AA seq
DB search
MSDSALPRDLHYVDDTQPGIRRKTLRGKFQYFDPKGERITDADEIKRLNALAVPPAYTDV
WICADPRGHLQATGRDARGRKQYRYHARWREVRDTDKYSRLQEFGSALPKLRKQLEAQIA
EPGFTREKVLATVVTLLDATLIRVGNTQYARDNKSYGLTTLRTRHVDVKGSEIKFQFRGK
SGVEHQISVKDRRLATVVKRCLELPGQNLFQYLDEDGERHTVSSQDVNGYLHKLTGADFT
AKDYRTWAGTAMALAVLRELEWQPESDAKRHVVSMVKDVAKQLGNTPAVCRKCYIHPAVL
EHFSLGELSKLPKPRLRKGLKAEEVALAMFLEQLAADLPKKAKTG
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactctgcgctgccccgcgacctgcattacgttgacgacacccagcccggcatc
cgccgcaagacgctgcgcggcaagttccagtatttcgaccccaagggcgaacgcatcacg
gatgccgacgagatcaagcgcctcaacgcgcttgccgtcccgccggcctacaccgatgtg
tggatctgcgccgacccgcgcggccatctgcaagctaccggccgcgatgcgcgcgggcgc
aaacagtatcgctatcacgcgcgttggcgcgaagtgcgggacacggacaagtattcgcgg
ctgcaggaattcggcagtgcactgccgaaattgcgcaaacagctcgaagcgcaaatagcc
gagcccggatttacccgcgaaaaggtgctggccaccgtggtgacgctgctggacgctacg
ctgatccgcgtcggtaatacccagtatgcccgcgacaacaagtcctatgggctgaccacc
ctgcgcacccgtcatgtggatgtaaaaggcagcgaaatcaagttccagtttcgcggcaag
agcggcgtcgagcaccaaatcagcgttaaggaccggcgactggcgacagtggtcaaacgc
tgcctggaattgccgggccagaacctgttccagtacctggatgaggatggcgagcggcac
accgtcagctcccaagacgtgaatggttacctgcacaaactcaccggcgccgacttcacc
gccaaggattaccgcacctgggccggcaccgccatggcgttggccgtattgcgggaactg
gagtggcagcccgaatccgatgccaaaaggcatgttgtgtcgatggtcaaggatgtcgcc
aagcagctgggtaacaccccggcggtgtgccgcaagtgttacatccaccctgccgtgctg
gagcatttcagcctcggcgaactctccaagttgcccaagccgcgcctgcgcaaagggctc
aaggccgaagaagtggccttggcgatgtttcttgagcaattggcggcggacttgccgaaa
aaagccaagacgggttag
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