Pseudomonas canadensis: V6L78_25465
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Entry
V6L78_25465 CDS
T10710
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcaa Pseudomonas canadensis
Pathway
pcaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6L78_25465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcaa03019
]
V6L78_25465
03009 Ribosome biogenesis [BR:
pcaa03009
]
V6L78_25465
Enzymes [BR:
pcaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6L78_25465
Messenger RNA biogenesis [BR:
pcaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6L78_25465
Ribosome biogenesis [BR:
pcaa03009
]
Prokaryotic type
rRNA helicases
V6L78_25465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
WWL83218
LinkDB
All DBs
Position
complement(5525656..5527329)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatctgaacccgaatattcttgcagcc
gtcgcagcgactggctacgaagagccttcggcgattcagcagcaatcgatcccgatcatc
atggccggtaaggacatgattggccaggcgcaaaccggtaccggcaaaactgccgcgttc
gctttgccaatcctgcactgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccaggcgtaaccgttgtggccgtttacggcggcgcgcctatgggcccacaactcaaa
gcaatccgtaatggcgcacagatcgttgttgccaccccgggccgtctgtgcgaccacctg
cgtcgtgacgagaaagtcctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgctgaagctgggcttcatggatgacctggaggtcatcttcaaggcactgccaccaacc
cgtcaaaccgtactgttctcggccaccctgccacagtcgatccgtgccatcgccgagcgt
cacctgcgcgatcctgagcacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccaacgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgcccgtggccttgacgttccacgtatcacccacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgcgggt
cgcgaaggtcgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgccgaagtccgcctgccggatgcccaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcctgtcgccgctggtggctgacgctgaatcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gctgcagccctgctgcgtaaagctaccaacggtcaagcattgacgctggcagccatcgag
aaagaacgtccactggttccgaacagcgcgccacgcggtgatcgtccagagcgtactggc
gaccgtccagaccgtggtgatcgtgagcgtcgcgctccggtgccattggctgaaggccgt
gctcgttgccgtaccgcgctgggcgcgcgtgatggtatcgctgccaagaacctgctgggc
gctatcctcaatgagggtggcctggcacgtgaagccatcggtcgtatccaggttcgtgac
agcttctccctggtggagctgccggaagacggcctggaaaaactgctggccaagctgaaa
gacactcgcgttgccggtaagcagctgaagctgcgtcgctaccgcgaagattga
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