Pseudomonas canadensis: V6L78_27955
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Entry
V6L78_27955 CDS
T10710
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcaa Pseudomonas canadensis
Pathway
pcaa03030
DNA replication
pcaa03430
Mismatch repair
pcaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6L78_27955 (dnaE)
03430 Mismatch repair
V6L78_27955 (dnaE)
03440 Homologous recombination
V6L78_27955 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcaa03032
]
V6L78_27955 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcaa03400
]
V6L78_27955 (dnaE)
Enzymes [BR:
pcaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V6L78_27955 (dnaE)
DNA replication proteins [BR:
pcaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V6L78_27955 (dnaE)
DNA repair and recombination proteins [BR:
pcaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V6L78_27955 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
WWL83687
LinkDB
All DBs
Position
complement(6005864..6009385)
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG
IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEH
LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYDAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLDIAFIPLDDKPTYT
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGESPVEAIVEARQSGPFADLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGDLLKRHRGACPVTMEYTGSDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctacgcctgcacactgaatactccctggtcgacggcctg
gtacggatcaaaccgctggtcaaaaccctggtgggcatgaacatgcctgcggtcgcggtg
accgatcagaacaacatgtgttccctggtcaagttctacaagaacgccatgggcgccggc
atcaagccgatctgcggtgccgacctgtggctgtccaacaaagacccggataaccccctc
agccgcatcagcctgctggcgatgaatggcgtgggttatcgcaacctcaccgaattgatt
tcccgtggctttatcgacggccagcgcaatggctcgatcatcatcgagcgcgaatgggtt
gccgaggccagcgaaggcctgatcatgctgtcggccgccaaagagggcgagatcggtatc
gcgctgctgggtggcaatcctcaagaagccgaagtactggccaaggagtggatgcaggtc
ttcccggatcgtttctacctggaggtccagcgtaccaaccgccccaacgacgaagagcat
ctgcacgccgccgtggccctggccgataagctgggcgcgccgttggtggcgaccaacgat
gtgcgtttcatcaagaaggaagacttcgaagcccacgaaacccgcgtgtgcatcggcgaa
ggccgtgccctggatgacccgcgtcgctcgaagaactacagcgaagagcagtacctcaaa
agcgccgacgaaatggcggagctgttcagcgacctgcccgaggccctggaaaactccgtc
gaaatcgccaagcgctgcaatatcgaagtgaagctgggcaagcacttcctgcccaacttc
ccgattcccgatggcatgaccatcgatgaatatttccgcaaggtgtcgttcgacgggctg
gaagagcgcctcagcgttctgctgcccaaggacaccaccgaagattacgacgccaaacgc
caggtctacgtcgatcggctgaatttcgagctggatatcatcatccagatggggttcccc
ggttacttcctgatcgtaatggactttatccagtgggccaaaagcaacggcgtgccggta
ggtccaggccgggggtcgggtgccggctcgctggtggcctatgtgcagaagatcaccgac
ctcgaccctctggaatatgacctgctgttcgaacggttcctgaacccggaacgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggccgtgaccgcgtgatcgaatacgtg
gccgagaaatatggccgcaacgcggtgagccagatcatcaccttcggttccatggcggcg
aaggctgtaatccgtgacgtggcccgggtgcagggcaagtcctacggcctggcggaccgt
ctgtcgaagatgatcccgttcgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gaaatcctgcgcgacttcatcaaggtcgatgaagaagccgccgaaatctgggacatggcg
cgcaagctcgaaggcgttgtgcgtaacgtcggtaagcacgccggtggtgtggttattgct
cctacaaaactcaccgatttttcgccgatctactgcgacgaagaaggcgacggcctggta
acccagttcgacaaggacgacgtggaggctgccggcctggtgaagttcgacttcctcggg
ctgcgaaccctgacgatcatcgactgggcgctcaagaccatcaaccgcgaccgcgccaag
gtcaacgaagcgccgctggatatcgcgtttatcccgctggacgacaaaccgacttacacc
ttgctgcaaaaagccgaaaccacggcggtgttccagcttgagtcgcgcggcatgaaagag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtggccctgttc
cgtccgggcccgttgcagtccggcatggtggacgacttcatcaaccgtaagcacggtcgc
gccgagttggcgtacccgcactcggactaccagtacgaaggcctcaagccagtactggcg
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtgatggcc
ggctataccctcggcggcgcggacatgctgcgtcgagccatgggtaagaaaaagcctgaa
gaaatggccaagcagcgtggcggtttcattgaaggttgcgccaccaacaatatcgacgcg
gacctggccggtaacatcttcgacctggtggaaaagttcgccggttatggtttcaacaaa
tcccactcggccgcctacggcctggtgtcgtaccagactgcctggctgaaagcccactac
ccggcgccgttcatggccgcggtactctcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcgcaccatgaagctgcgccttgacgcgccggacgtgaacgcc
tcggagttcaagttcacggtgaacgacgaaggccgcatcatttatggcctgggcgcgatc
aaaggcgtaggcgaaagcccggtggaagctatcgtcgaagcgcgtcagagtgggccgttc
gccgacctgtttgacttctgtgcgcgggttgacctcaaacgcattaacaagcgtaccctc
gatggcctgatccgcagcggcgcactcgaccgtctcggcccgtatttccatgatgagccc
aaggcttaccaggcgaatatcgaccgcaaccgtgcggtgctgctcaccgcgatggaagaa
gcgatcaaggccgccgaacagaccgcccgcacccatgacagcggccatgccgacctgttt
ggcgggttgttcgtcgaagaagatgcggatgtgtacgccaaccaccgcaaggccaaggag
ctgaccctcaaggaacgtctcaagggtgagaaagacaccttgggcctgtaccttaccggt
cacccgattgacgaatacgaaggtgaaatccgccgtttcgcccgtcagcgcatcatcgac
ctgaagcctgcgcgggatacccagaccgtcgccggcatgatcatcgccttgcgggtgatg
aagaataaaaagggcgacaagatgggcttcatcacccttgacgaccgttcagggcgcatc
gaagcctcactgtttgccgacgccttccactccgcacagtcgctgttgcagaccgatgcc
atggtggtggtggaaggggaggtcagcaacgatgacttctccggtggcctgcgcctgcgg
atcaagcgcgtgatgagcatggaagacgcgcggaccaatctggccgaaagcctgcgcttg
aaggtaaaaaccgaagcgctcaagggcgatcagctacgctggttgggcgacctgctcaaa
cgccaccgcggcgcatgcccggtgaccatggagtacaccggcagtgacgccaaggccatg
ttgcagtttggcgagacttggcggattgatccggctgatggcttgattcaagctttgcgt
gaccagttcgggcgagacaacgtcttcctccaataccgttga
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integrated database retrieval system
