Pseudomonas cannabina pv. alisalensis: JGS08_00530
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Entry
JGS08_00530 CDS
T07379
Symbol
gabD
Name
(GenBank) NADP-dependent succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab00250
Alanine, aspartate and glutamate metabolism
pcab00310
Lysine degradation
pcab00350
Tyrosine metabolism
pcab00650
Butanoate metabolism
pcab00760
Nicotinate and nicotinamide metabolism
pcab01100
Metabolic pathways
pcab01120
Microbial metabolism in diverse environments
Module
pcab_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
JGS08_00530 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
JGS08_00530 (gabD)
00310 Lysine degradation
JGS08_00530 (gabD)
00350 Tyrosine metabolism
JGS08_00530 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
JGS08_00530 (gabD)
Enzymes [BR:
pcab01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
JGS08_00530 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
JGS08_00530 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
JGS08_00530 (gabD)
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Motif
Pfam:
Aldedh
DUF1487
Motif
Other DBs
NCBI-ProteinID:
QQN22254
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Position
111911..113353
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AA seq
480 aa
AA seq
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MQLKDSTLFRQQAYINGQWLDADGGQSIKVNNPATNEILGTVPKMGAAETRRAIEAADKA
LPAWRALTAKERGNKLRRWFELMIENQDDLGLLMTLEQGKPLAEAKGEITYAASFIEWFA
EEAKRVYGDVIPGHQPDKRLIVLKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLK
PASQTPFSALALAELAERAGIPAGVFSVVTGSAGDIGSELTSNPIVRKLSFTGSTEIGRQ
LMAECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAMISKYRNNGQTCVCANRIYVQDA
VYDAFAEKLKAAVGKLKIGNGLEDGITTGPLIDDKAVAKVKEHIADAVSKGATVLTGGNS
LEGSFFEPTILVNVSKDAAVAKEETFGPLAPLFRFKDEAEAIALANDTEFGLASYFYAQN
MSRVFRVAEALEYGMVGINTGLISNELAPFGGIKSSGLGREGSKYGIEDYLEIKYLCLSV
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttaaagattccactctgttccgccagcaagcctatatcaacggtcagtggctg
gacgcggacggtggtcagtcgatcaaggtcaacaacccggcgactaacgagatcctcggt
acggtgccgaaaatgggtgcggccgagacgcgtcgggcgattgaggcggctgacaaggcg
ctgccggcctggcgtgcgctgaccgccaaagagcgcggcaacaagctgcgtcgctggttc
gagctgatgatcgagaaccaagacgacctgggcctgttgatgactttggagcagggcaag
ccgctggctgaggccaagggcgagattacctatgcggcgtccttcatcgagtggttcgcg
gaagaagccaagcgcgtgtacggcgatgtgattcccggtcatcagccggacaagcgtctg
atcgtgctcaagcagccgattggtgtgacggcggcgatcacgccgtggaatttcccggca
gcgatgatcacccgcaaggccggccctgcgctggcagcgggttgcaccatggtgctcaag
cctgcgtcgcaaacgcccttttctgcgttggcgctggctgaactggccgaacgtgcgggc
atcccggctggcgtgttcagcgtggtgaccggtagcgcgggcgacatcggcagcgagctg
accagcaacccgattgtgcgtaaattgtccttcaccggctcgaccgagatcggtcgccag
ctgatggccgaatgcgccaaggacatcaagaaagtgtcgctggagctgggcggtaacgca
ccgttcatcgtgttcgacgatgctgacctcgacaaggcggtcgagggcgcgatgatctcc
aagtaccgcaacaacggccagacctgcgtctgcgccaaccgcatctatgtgcaggacgcg
gtgtatgacgcgtttgccgagaagctcaaggccgcggtcggcaagctgaagatcggtaac
ggtctggaagacggcatcaccactggcccgctgatcgacgacaaggcggtggccaaggtc
aaagaacacattgccgacgcggtcagcaaaggcgcgaccgtgctgacgggcggcaacagc
ctggaaggttcgttcttcgagccgactattctggttaacgtgtcgaaagatgctgccgtt
gccaaagaagaaacctttggcccgctggctccgctgttccgtttcaaggacgaggccgaa
gcgattgcgctggccaacgacaccgagttcggtctggcgtcgtacttctacgcgcagaac
atgagccgggtgtttcgggttgccgaagcgctggaatatggcatggtgggtatcaacacc
ggtctgatctccaacgaactggcaccgttcggcggtatcaagtcgtcgggcctgggccgt
gaaggctccaagtacggcatcgaagattatctggaaatcaaatacctctgcctgtcggtc
tga
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