Pseudomonas cannabina pv. alisalensis: JGS08_01525
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Entry
JGS08_01525 CDS
T07379
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JGS08_01525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcab03019
]
JGS08_01525
Enzymes [BR:
pcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JGS08_01525
Messenger RNA biogenesis [BR:
pcab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JGS08_01525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQN22443
LinkDB
All DBs
Position
complement(330936..332828)
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AA seq
630 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGTN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL
AHLITVGAWEQVLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTRQKIPDGDLMGFDITAVEAEKPEVRERPDVRNPRGARPARGDGDKNNGGRRD
KGKDKGKEKPAAAAAAGERPARQPREKKPREGTPRSEQRASQPATPRPASDRAPDEFRDD
EVDNFGNRADYVSPYQGKGQNRGRRPAAAPGAAAPAAGGAARPPSQGRPAGGAPRTGSGT
GAPKRNGSGTSAPRSRDGQPRGRRPAREEQPLPREGQEPAVRAPRDGQPQPKIVHKESKI
DRFPSAEQLDQLPARPRGEKPALLTRNRDS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tacacccagccgacccccgtgcaacagcgggccatccccgccgtgttgcaaggtcgcgac
cttatggttgcggcacagacaggtactggtaaaaccggcggcttcgccctcccgattctg
gagcggttgtttcccaatggtgttccggacaaatcccagcgtcacggcccgcgccaacca
cgcgttctggtcctgaccccgacgcgcgaactcgccgcgcaggtgcatgacagcttcaag
ctgtatgcccgcgacctgaagttcgtcagcgcctgtatcttcggcggcgttggcacgaac
cctcaggttcaggccatggcccgtggtgtggacgtactggtggcctgccccggccgcctg
ctcgacctcgccggccaaggcagcgtcgacttgtcccacgtcgaaatcctggtgctcgat
gaagcagaccggatgctcgacatgggcttcgtgcatgacgtcaaaaaggtccttgcccgc
ttgcctgccaagcgtcagaacctgctgttttcggcgacgttctccaacgacattaccgcc
ttggctggcaagctgctgcataacccggagcgcatcgaagtcacgccaccgaacaccacg
gtcgagcgtatcgagcaacgggttttccgccttcccgccaaccataaacgctcgctgctg
gcgcatctgattaccgtcggtgcctgggaacaggtgctgatcttcacgcgtaccaagcat
ggcgccaaccgcctggccgagtacctggacaagcacggtcttgcggccgtggcgatccac
ggcaacaagagtcagaacgcgcgcaccaaggccctggccgacttcaaggccggtgatgtt
cgcatcatggttgccaccgatatcgcggcccgcggcctggacatcgatcagttgccacac
gtggtcaacttcgaactgcctaacgtcgacgaagattacgtgcaccgtatcggtcgtact
ggccgtgcaggtcgttctggcgaagccatttcgctggttgcgccggacgaagagaagctg
ctcaaaagcatcgagcgcatgacccgacagaagatcccggatggcgatctgatgggcttt
gatatcactgcagtcgaggctgaaaagccggaagtgcgtgagcgcccggatgtccgcaac
ccgcgtggcgcgcgtcctgcgcgtggtgatggcgacaagaataatggtggtcgtcgcgac
aagggcaaggataaaggcaaggaaaaacctgccgctgcggccgccgctggcgaacgccct
gccaggcagccacgcgaaaaaaaacctcgtgagggcacgcctcgcagcgaacagcgtgca
tcgcaacctgccacaccgcgcccggcatcggatcgcgcccctgatgagtttcgcgatgac
gaagtagacaactttggcaatcgcgctgactacgtcagcccttatcagggtaaaggccag
aatcgtggtcgtcgtccggcagccgcgcctggtgcagctgcaccggcagctggcggcgct
gctcgtccacctagtcagggtcgccctgcaggtggtgctccacgtaccggttccggtact
ggcgcacccaagcggaacggctcgggcacttcggcaccgcgctcgcgcgatggtcagcca
cgcggtcgtcgtccagcccgcgaagagcaacccttgcctcgtgagggtcaggagccagct
gtgcgcgccccgcgtgacggccagcctcagccgaagatcgtgcacaaggaatcgaagatc
gaccgcttcccgtctgccgagcaactggatcagttgccagcacgcccgcgcggtgaaaaa
ccggccctgctgacccgcaaccgcgacagctga
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