Pseudomonas cannabina pv. alisalensis: JGS08_01615
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Entry
JGS08_01615 CDS
T07379
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03030
DNA replication
pcab03430
Mismatch repair
pcab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JGS08_01615
03430 Mismatch repair
JGS08_01615
03440 Homologous recombination
JGS08_01615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcab03032
]
JGS08_01615
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_01615
Enzymes [BR:
pcab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JGS08_01615
DNA replication proteins [BR:
pcab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JGS08_01615
DNA repair and recombination proteins [BR:
pcab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JGS08_01615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
QQN22459
LinkDB
All DBs
Position
complement(352356..353069)
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AA seq
237 aa
AA seq
DB search
MNLFEWLRPRRKSAPMHAHQLQRLEQLPVCARLSDKPLRQQRWVVLDLETSGLNMNRDQV
LSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAPSTIAAGSEPAQALLDFMEF
VGDSPILGFHAPFDQHMLARALKESLDYRLQHPFFDAAEIAPMLFEQANLRHAGLDDWTR
YFGLHAEERHNASADALVTAELALILFSHARRQQIDSPLLLEEKLGQWRRRKQSHSF
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgttcgaatggctcaggcctcgtcgcaagtcagcgccaatgcacgctcatcaa
ttgcagcggcttgaacaactgcccgtttgcgcgcggctcagtgacaagccgttgcgccaa
caacgctgggtggtgctggatctggaaaccagcggtttgaacatgaaccgcgatcaggtg
ctgtccatcggggcggtcgtcatcgaggacggggccatcgatctgggtcagcagttcgaa
cgcaccctgttgcgcgtcgaccataaagtcagcccggcggtgttgattcatggcctggcg
cccagcacgattgcggcaggcagcgagccagcccaggcattgctggacttcatggagttt
gtcggcgacagtccgattctgggttttcatgcgccgttcgaccagcacatgctggcgcgg
gcgctcaaggaaagcctggactatcgcctgcagcacccatttttcgacgccgccgaaatc
gccccgatgttgttcgagcaggccaacctgcggcatgccgggctcgacgactggacccgc
tatttcggcctgcacgccgaagaacgccacaacgccagcgccgatgccttggtcaccgcc
gagttggcgctgatcctcttcagccacgcccgccgccaacaaatcgacagcccgctgtta
ctggaagaaaagctcggccaatggcgcagacgcaaacagtcgcattcgttctga
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