Pseudomonas cannabina pv. alisalensis: JGS08_01865
Help
Entry
JGS08_01865 CDS
T07379
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JGS08_01865 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcab03021
]
JGS08_01865 (rpoD)
Transcription machinery [BR:
pcab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JGS08_01865 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QQN22502
LinkDB
All DBs
Position
complement(412410..414257)
Genome browser
AA seq
615 aa
AA seq
DB search
MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTSEGGRLSDVLSGYIDPDDGIAPPAEV
PPPVDPKAAKAEGDDEEEETAEATDDEEEVESGPDPVIAQQRFGAVSDQMEITRKALKKF
GRDDKHAIAEMVALAELFMPIKLVPKQFEGLVERVRGALERLRAQERAIMQLCVRDARMP
RADFLRQFPGHEVDESWTDALAKGKSKYAEAIARLQPDIQRCQQKLSALEEETGLKIAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcaccctgggtcgtgag
cagaagtatctgacttacgcagaggtcaacgaccacctgcccgaggatatttcagatcct
gagcaggtggaagacatcatccgcatgatcaacgacatggggatcccggtacacgagagt
gctccggatgcggacgccttgatgctggccgacgccgataccgacgaggcagccgcagaa
gaagcggctgcagcgttggcagcggtcgagaccgacatcgggcgtaccaccgatcccgtt
cgcatgtacatgcgggaaatgggcaccgttgaactcctgacccgtgaaggcgagatcgaa
atcgccaaacgtatcgaagaaggcatccgtgaagtgatgggcgcaatcgcgcacttccca
ggcacggttgaccatatcctctccgaatacacacgtgtcacgagtgaaggcggtcgtctc
tccgacgttctaagcggttacatcgacccggatgacggcattgcgccgcctgccgaagtg
cctccgcctgtcgaccctaaagccgccaaggctgaaggcgatgacgaagaagaagaaacg
gcagaggccaccgatgacgaggaagaggtcgaaagcggccccgatccggtcattgcccag
cagcgctttggtgccgtttccgatcaaatggaaatcacccgcaaggcgttgaagaagttc
ggtcgcgacgacaagcacgccattgccgaaatggtggccctcgccgaactgttcatgccg
atcaaactggttccaaagcagtttgaaggtctggtagagcgtgttcgcggtgcccttgag
cgtcttcgtgctcaggaacgcgccatcatgcagctgtgtgtacgtgatgcacgtatgccg
cgcgccgacttcctgcgccagttcccgggccacgaagttgacgaaagctggactgacgcc
ctggccaaaggtaaaagcaaatacgctgaagccattgcccgtctgcagcctgatatccag
cgttgccagcaaaagctgtcggcactggaagaagagaccggcctgaaaatagccgagatc
aaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaagag
atggttgaagcgaacttgcgtctggtgatctccattgccaagaagtacaccaaccgtggc
ctgcaattcctcgacctgatccaggaaggcaacatcggcttgatgaaggctgtggacaag
ttcgaataccgtcgcggttacaagttctcgacatacgccacctggtggatccgtcaggcg
atcactcgctcgatcgccgaccaggcacgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgtatttcccggcagatgttgcaggaaatgggtcgcgaaccg
accccggaagagctgggcgaacgcatggaaatgcctgaggacaagatccgcaaggtactg
aagatcgccaaagagccgatctccatggaaaccccgatcggcgatgacgaagattcgcac
ctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgttgccactgttgaa
agcctgaaagaagcgacacgcgaagtgctgtcgggcctcaccgcccgtgaagccaaggtt
ctgcgtatgcgtttcggcatcgacatgaacaccgaccacacgcttgaagaggtgggtaaa
cagttcgacgtaacgcgtgagcggattcgtcagatcgaagccaaagcactgcgtaaactg
cgtcacccgacccgaagcgagcacctgcgctcgttcctcgacgagtaa
DBGET
integrated database retrieval system
