Pseudomonas cannabina pv. alisalensis: JGS08_02320
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Entry
JGS08_02320 CDS
T07379
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JGS08_02320 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcab03021
]
JGS08_02320 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_02320 (rpoC)
Enzymes [BR:
pcab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JGS08_02320 (rpoC)
Transcription machinery [BR:
pcab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JGS08_02320 (rpoC)
DNA repair and recombination proteins [BR:
pcab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JGS08_02320 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QQN22579
LinkDB
All DBs
Position
500013..504212
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRIHETVNDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKERVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEIIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGLDGKDLLLPGTDVPAQYFLPANAMVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLSTEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREMDKPTR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttactgaatttgctgaaaaaccagggtcaggtcgaagagttcgacgcaatc
cgtatcggacttgcatcgcctgagatgatccgttcctggtcgttcggtgaagttaaaaag
cccgaaaccatcaactaccgtacgttcaagcctgagcgtgacggtctgttctgcgccaag
atttttggcccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaagcat
cgcggtgtcatctgcgaaaaatgcggtgttgaagtggctctggccaaggttcgtcgcgag
cgtatggctcacatcgaactggcttcgccggttgctcacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctcgaagagttcggtgatgactttgacgcccgtatg
ggtgctgaagctgttcgcgaattgctgcacgctatcgatctggaacacgaaatcggccgt
ctgcgtgaagagattccgcaaaccaattccgaaaccaagatcaagaagctgtccaagcgt
ctgaagctgatggaagccttccagggttccggcaacctccctgagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtcctctggttccgcttgacggtggccgtttc
gcgacgtccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtttgaag
cgtctgctggatctgtctgctcccgatatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgatgcactgctcgacaacggtcgtcgcggtcgcgccatcactggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactcgggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaaaaaaatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggcctggccacgaccatcaaagctgccaagaaaatg
gtcgagcgcgagctgccagaagtctgggacgttcttgctgaagtgattcgcgaacaccca
gtgctcctgaaccgtgccccaacgcttcaccgtctgggtatccaggcctttgagccggtt
ctgattgaaggtaaggctattcagctgcacccgctggtctgcgctgcgtataacgccgac
ttcgacggtgaccagatggccgttcacgtgcctttgacgctggaagcccagctcgaagcg
cgcgcactgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccttcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aaaggcgaaggtcgtgtgtttgcggatctgcaggaagtcgaccgcgtattccgcgccggc
gaggcggctctgcacgccaaggtcaaggttcgtatccacgaaacggtcaatgatcgtgat
ggtggcagcgtcaagaacactcgtatcgtcgacaccactgtcggccgtgcgttgctgttc
caggtagttccggccggcctgtcctacgacgtcgtcaaccagccgatgaagaaaaaagcg
atctccaaactgatcaaccagtgctaccgcgtggttggtttgaaagagaccgttatcttc
gctgaccagttgatgtacaccggttttgcctactcgaccatttcgggtgtttccatcggc
gttaacgacttcgttatcccggatgagaaagctcgcatcatcgacgcggccaccgaagaa
gttaaagagatcgaaagccagtacgcttccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctttggtccaaggcgaacgacgaagtctcgaaagcgatgatgtcgaac
ctgtctaaagagcgggttatcgaccgtcacggcgtcgaagttgatcaggaatccttcaac
tcgatgtacatgatggctgactccggggcgcgtggttctgctgctcagattcgtcagctg
gccggtatgcgtggtctgatggccaagcctgacggctccatcatcgaaacgccgatcact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aagggtcttgcggataccgcgttgaaaaccgctaactccggttatttgactcgtcgtctg
gtagacgtggctcaggatctggtcgttaccgaagtagactgcggtaccgagcacggtctg
ttgatgacaccgcacattgaaggcggtgacgttgtagagccgctcggtgagcgcgtgctg
ggtcgagtcatcgcccgtgacgtattcaagccgggtacagaagaaatcatcgtgcctgca
ggcactctggttgacgagaaatgggttgagttcatcgagctgaacagcatcgacgaagtc
atcgttcgctcgccaatcagctgtgaaactcgctacggtatttgcgccaagtgctacggt
cgcgacctggctcgtggtcaccaggtcaacatcggtgaagctgtaggcgttatcgctgca
cagtcgatcggtgagccaggtacccagctgacaatgcgtacgttccacattggtggtgcg
gcaagccgaacttcggcagccgacagcgttcaggtaaagaacggcggtactgtccgtctt
cacaacctgaagcacgtagagcgtgtcgatggtcacctagttgcggtatcccgctccggt
gagctggcaatcgctgatgacttcggtcgtgagcgtgagcgttacaaactgccatatggt
gcagtgatttcggtgaaggaaggcgataaggtcgacgctggttcgatcgtggccaagtgg
gatccgcacactcacccaatcgtcaccgagatgaaaggtactgttacctacgtcggcatg
gaagaaggcatcacgatcaagcgtcagacagacgaattgaccggtatgaccaacattgaa
gtgcttgatgccaaagaccgcccggctgctggcaaggacatccgtcctgccgtgaagatg
gtcggtctggatggcaaggatctgctgctgccaggtaccgatgtaccggcccagtacttc
ctgccggctaacgccatggttggtgtagctgacggtgcgcagatcgcgatcggtgatgtt
atcgctcgtattccgcaggaaacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagcgcgtcgtccgaaagaggcgtcgatccttgcagaagtcagc
ggtaccatcgcattcggtaaagagaccaaaggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgagcaagtgaaccgcggcgaagttatctccgacggcccgagcgatccacacgacatc
ctgcgtttgctgggtgtgagtgcgcttgccaagtacatcgtcaacgagattcaggacgta
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcttgcgtcagatg
ctgcgtaaagttgagattgccgagtctggcgattccagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagaaaacgagcgtctgagcacggaagacaagtttgtttcc
aagttcactcgtgtgttgctgggtatcaccaaggcatcgctgtccaccgagtcgttcatc
tccgcggcctccttccaggagacaacccgcgtactgaccgaagcggctgtgacaggcaag
cgtgattacctgcgcggcctgaaggaaaacgtggtcgtgggtcgtttgatcccggccggt
actggtctggcttatcacagcgagcgtaagcgtcgccgtgaaatggacaaaccaacccgt
gtcagcgccagcgaagtagaagcggctctgacggaagcgttgaactccagcggtaactaa
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