Pseudomonas cannabina pv. alisalensis: JGS08_02475
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Entry
JGS08_02475 CDS
T07379
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JGS08_02475 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcab03021
]
JGS08_02475 (rpoA)
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_02475 (rpoA)
Enzymes [BR:
pcab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JGS08_02475 (rpoA)
Transcription machinery [BR:
pcab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JGS08_02475 (rpoA)
DNA repair and recombination proteins [BR:
pcab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JGS08_02475 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
QQN22610
LinkDB
All DBs
Position
521161..522162
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGALNMKLTVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VIEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgacaccccgccacattgatgtgcaggttgtcagt
ccaacccgcgccaagatcactctcgagcctctcgagcgtggtttcggccataccctgggc
aacgcgcttcgccgcattttgttgtcctccatgcccggctgtgcagtagtcgaggccgag
attgacggtgtgctccatgagtacagcgccatcgaaggtgtacaggaagacgtcattgaa
atcctgttgaaccttaaaggtctggctatcaagctgcacggtcgagacgaagttacgctg
accttgtcgaagaagggttcgggggtggttaccgctgccgatattcagctggatcatgat
gtcgagatcgttaaccccgatcacgtaatcgctaacctggcgtctaacggcgccttgaac
atgaagctcaccgtagctcgtggtcgtggttatgagccggcagactcgcgtcaaagcgat
gaagacgaaagccgcagcattggtcgcttgcagctcgactcttcgttcagcccggttcgc
cgtatcgcatacgtggtggaaaacgcccgtgtcgagcagcgtactaacctggacaagctg
gttattgatctggaaaccaacggtactctggaccctgaagaggcaatccgtcgcgctgca
accatcctgcaacagcagttggctgcgttcgtggacctcaaaggcgacagcgaaccagtg
gtaatcgaacaggaagacgagatcgatccgatcctgcttcgtccggttgacgatttggaa
ctgaccgtgcgttcggccaactgccttaaggcggagaacatctactacatcggcgacctg
attcagcgcaccgaagtagagttgttgaagactccgaacttgggcaagaaatccttgacc
gagatcaaggacgttctggcttctcgtggtctgtccctcggcatgcgcctcgacaactgg
ccgccggcaagtcttaagaaggacgacaaggctacggcctga
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