Pseudomonas cannabina pv. alisalensis: JGS08_03555
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Entry
JGS08_03555 CDS
T07379
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab00260
Glycine, serine and threonine metabolism
pcab00460
Cyanoamino acid metabolism
pcab00630
Glyoxylate and dicarboxylate metabolism
pcab00670
One carbon pool by folate
pcab00680
Methane metabolism
pcab01100
Metabolic pathways
pcab01110
Biosynthesis of secondary metabolites
pcab01120
Microbial metabolism in diverse environments
pcab01200
Carbon metabolism
pcab01230
Biosynthesis of amino acids
pcab01240
Biosynthesis of cofactors
pcab04981
Folate transport and metabolism
Module
pcab_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
JGS08_03555
09102 Energy metabolism
00680 Methane metabolism
JGS08_03555
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
JGS08_03555
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
JGS08_03555
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
JGS08_03555
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
JGS08_03555
Enzymes [BR:
pcab01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
JGS08_03555
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GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
Aminotran_5
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-ProteinID:
QQN22787
LinkDB
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Position
complement(783358..784611)
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AA seq
417 aa
AA seq
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MFSRDLTIAKYDADLFAAMEQEALRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYP
GKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHAGSQANSAVYLALLQGGDTILGMS
LAHGGHLTHGASVSSSGKLYNAVQYGIDGNGMIDYDEVERLAVEHKPKMIVAGFSAYSQI
LDFQRFRDIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLIL
ARANPEIEKKLNSAVFPGSQGGPLEHVIAAKAICFKEALQPEFKVYQQQVVKNAKAMAGV
FIERGFDVVSGGTENHLFLLSLIKQDISGKDADAALGRAFITVNKNSVPNDPRSPFVTSG
LRFGTPAVTTRGFKEAECKELAGWICDILADLNNEAVIDAVREKVKAICAKLPVYGA
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttcagccgtgatttgactatcgccaagtacgacgccgatctgtttgccgccatggag
caagaagctctgcgtcaggaagaacacatcgagctgattgcctcggaaaactacaccagt
ccggccgtcatggaagctcaaggctcggtcctgaccaacaagtacgctgaaggctaccca
ggcaagcgttactacggaggctgcgagtacgtcgacgttgtcgagcaactggctatcgac
cgtgccaaggaactgttcggtgcggattacgccaacgtccagccgcacgctggctcgcag
gccaactcggcggtttacctggctctgctgcaaggcggcgacaccattctgggcatgagc
ctggcacacggcggtcacttgacccacggtgccagcgtgtcgtcctcgggcaagctgtac
aacgccgttcagtacggcatcgacggcaacggcatgatcgactacgacgaagtcgagcgc
ctggccgtcgagcacaagccgaaaatgatcgttgccggtttctctgcctactcgcagatc
ctcgacttccagcgctttcgtgatattgccgacaaggtcggtgcctacctgttcgtcgac
atggcccacgttgccggtctggttgcagcaggtgtctacccgaacccggtgcctttcgcc
gacgtcgtgaccaccaccacgcacaagaccctgcgcggtccacgtggcggcctgatcctg
gcgcgcgccaacccggaaatcgagaaaaagctcaattccgcagtattcccaggctcccag
ggcggcccgctggagcacgtcatcgcggccaaggcgatctgcttcaaggaagcgctgcag
cctgagttcaaggtctaccagcaacaagtggtcaagaatgccaaggcgatggccggcgtg
ttcatcgagcgcggtttcgacgtggtgtccggcggtactgaaaaccacctgttcctgctg
tcgctgatcaagcaggacatctccggtaaagacgccgacgccgctctgggtcgcgccttc
atcaccgtcaacaaaaactccgtacccaacgacccacgctccccgttcgttacctccggc
ctgcgcttcggcaccccggcagtgaccactcgcggcttcaaggaagcagagtgcaaggaa
ctggctggctggatctgcgacatcctggctgacctgaacaacgaagccgtaatcgacgcg
gtgcgtgagaaggtcaaggccatctgcgcgaagctgccggtttacggcgcgtga
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