Pseudomonas cannabina pv. alisalensis: JGS08_05610
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Entry
JGS08_05610 CDS
T07379
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JGS08_05610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcab03021
]
JGS08_05610
Transcription machinery [BR:
pcab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JGS08_05610
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
PhyR_sigma-like
HTH_28
HTH_11
HTH_24
CP_ATPgrasp_1
Motif
Other DBs
NCBI-ProteinID:
QQN23145
LinkDB
All DBs
Position
1238638..1239180
Genome browser
AA seq
180 aa
AA seq
DB search
MRDFSAVDDDARRRQQMTELYSDHHSWLQNWLRKKTGCSQRAADLAHDAFVRILTLTEPL
NLKEPRAFLATTATRLLIDGARRRKVERAYLDALALHADEVGIPGPEAVHAALQILERIA
RLLEGLPEKPRQAFLLHRLDGLTYSEIAIHLGVSSSMVKQYMASVMVHCYKTLHGSGHFA
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacttttccgccgttgatgacgacgcccgccgtcgccagcaaatgaccgagctc
tacagcgaccaccattcgtggttgcagaactggctgcggaaaaagaccggctgctcgcaa
cgtgccgccgatcttgcgcatgacgctttcgttcgaatcctgaccctgaccgaaccgctc
aacctcaaggaaccgcgcgcctttctggcgaccacggccactcgcttgctgattgatggc
gcgcggcggcgcaaggttgagcgtgcgtaccttgatgcgctggcgctgcatgccgacgag
gtcggcattcccggacccgaagcggtacacgccgccttgcagatcctcgagcgaatcgcc
cgattgcttgaaggcctgcccgaaaaaccgcgccaggctttcctgcttcatcgccttgac
gggctgacgtacagcgaaatcgccattcacttgggggtgtcctccagcatggtcaaacag
tacatggcaagcgtcatggtgcattgctacaagacactgcatggttcgggccattttgca
tga
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