Pseudomonas cannabina pv. alisalensis: JGS08_05745
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Entry
JGS08_05745 CDS
T07379
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcab03009
]
JGS08_05745
Enzymes [BR:
pcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JGS08_05745
Ribosome biogenesis [BR:
pcab03009
]
Prokaryotic type
rRNA helicases
JGS08_05745
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQN23165
LinkDB
All DBs
Position
1269575..1270912
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AA seq
445 aa
AA seq
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MFSEFALHERLLKAVAELKFVEPTPVQSAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK
VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM
LFSATTGGAGLREMIGKVLKDPQHLQVNNVSELASGTRHQIITADHNVHKEQVLNWLLAN
ETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT
DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER
YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDVKGDKKKVAAKGPTKRKTANR
PKSDLVSQDGMAPLKKRSTPAPAAE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
gtgttttccgaattcgccctgcacgaacgcctgcttaaagctgtggccgagcttaaattt
gtcgagcctacgcctgtgcagtcggccgccatcccgttggctttgcaagggcgcgacctg
cgggtgactgcgcaaaccggtagcggcaagacagcggcgttcgtactgccgatcctcaac
cgtctgatcggcccggccaaggttcgcgtcgatatccgcgcagtgatcctgctgccgacc
cgcgagctggcgcaacagacgctcaaggaagtcgagcggttttcccagttcaccttcgtc
aaggcgggtctgatcaccggcggcgaggacttcaaggtccaggcggccatgctgcgcaag
gtgccggacatcctgatcggcactccgggtcgtctgctggagcagctcaacgcgggcaat
ctggacctcaagcacgtcgaagtgctggtgctcgacgaagccgaccgcatgctggacatg
ggcttctccgaagacgtcgagcgtctggcgggcgagtgcgccggccgtgagcagaccatg
ctgttctcggcaacgactggcggcgccggtctgcgtgaaatgatcggcaaggtgctcaag
gatccacagcatctgcaagtcaacaacgtcagcgagctggcttccggcacgcgtcaccag
atcattacggccgaccacaatgttcataaagagcaggtgctgaactggctgctggccaac
gagacctatcagaaagccattatcttcaccaataccaaggcgatggcggatcgtttgtac
ggtcgtctggtggcgctggaatacaaggcgttcgtgctgcacggcgacaaggaccagaag
gaccgcaaggcggccatcgaccgtctgaagcagggcggcgcgaagatcatggtcgcgacc
gacgtagcggcacgcggtcttgatgttgaaggcctggacatggtgatcaacttcgacatg
ccgcgcagcggcgacgattacgtgcaccgcgtcggccgaaccggtcgtgccggcagtgac
ggtctggcgatttcgctgatctgtcatggcgactggaacttgatgtcgagcgtcgagcgc
tacctcaagcagagcttcgagcgccgcgtcatcaaggaagtcaaaggcacttatggcggc
cctaaaaaggtcaaggcgtcgggcaaggcagttggcgtcaagaagaaaaagaccgacgtg
aaaggcgacaagaaaaaagtcgctgccaaaggtccgaccaaacgcaagaccgccaaccgg
cccaagtctgacctggtcagccaggacggcatggcgccgctgaagaaacgcagcactccg
gcacctgccgctgagtga
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