Pseudomonas cannabina pv. alisalensis: JGS08_06270
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Entry
JGS08_06270 CDS
T07379
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcab03009
]
JGS08_06270 (rlmD)
Enzymes [BR:
pcab01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JGS08_06270 (rlmD)
Ribosome biogenesis [BR:
pcab03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JGS08_06270 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
Methyltr_RsmB-F
Methyltransf_11
TRM5-TYW2_MTfase
RrnaAD
Cons_hypoth95
PCMT
Methyltransf_15
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
QQN23262
LinkDB
All DBs
Position
1384716..1386071
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AA seq
451 aa
AA seq
DB search
MAKHERGLRFQPTGGVKSVQIPAGKKQRLSIERLSDDGRGIAFLDGKTWFVAGSLAGEEV
EARVLNARGKVVEARTERVFSASEMRRAPACDYFGRCGGCSVQHVPHEEQLALKQRMLAE
QLLRVANVTPDEWAAPLSGAELAYRRRARVAVRWDAKAKRLDVGFRAAASQDIVSIDECP
VLVQALQPIMRQLPTMLKSFSKPQVLGHVELFSGSSSAVLLRHTAPLADADLATLQAFCS
THGAQLWLHGEGEPQPASPGDTLGYWLEPWNLQLAWRPGDFIQVNAAVNTAMIEQALQWL
APGPDERVMDLFCGLGNFALPLAGLAKEVVAVEGVATMVERAAANAMSNDLHNVQFFQAD
LSQPLTHADWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELV
NQGYRLKRAGILDMFPQTAHVEAMALFEMSK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcatgaaagaggtttgcgctttcagccgaccggcggcgtcaaaagcgtgcag
attcctgccggtaaaaagcagcggttgagcatcgagcggctgtccgatgacgggcgcggc
attgcctttctggacggcaagacctggttcgtcgccggcagtctggccggcgaggaagtc
gaagcgcgggtgctcaatgcacgcggcaaggtggtcgaggcgcgcactgaacgtgtcttc
agcgccagcgaaatgcgtcgcgcaccggcctgcgattatttcggccgttgtggcggctgc
agtgttcagcacgtgccccatgaagaacagcttgccctgaaacagcgcatgctcgccgaa
cagttgttgcgggtggcgaacgtcacgcctgatgagtgggccgcgccgttgagcggggcc
gaattggcctatcgccgacgtgcgcgggtcgcggtgcgctgggacgccaaggccaaacgg
ctggatgtcggattccgcgccgccgccagtcaggatatcgtcagcatcgacgagtgtccg
gtgctggtacaggccttgcaaccgatcatgcgtcagttgccgacgatgctgaaaagtttc
agcaagccgcaggtgctggggcacgtcgaattgttcagcggctcgtcgagcgccgtgttg
ctgcgccataccgcgccgttggccgatgccgacctggcaaccttgcaggccttctgctca
acgcatggcgcgcagctctggctgcatggcgaaggcgagccacaaccggccagccccggc
gatacgctgggttactggctggagccgtggaacctgcaactggcttggcgtccgggagat
tttattcaggtcaacgcggcggtcaataccgcgatgatcgagcaggccctgcaatggctg
gcccctgggcctgatgaacgtgtgatggatctgttttgcggcctgggcaacttcgccttg
ccgctggcgggtctggcaaaggaagtggtggcggtcgaaggcgttgcgaccatggtcgaa
cgtgcagccgccaacgcaatgagtaatgatctgcacaatgtgcagttttttcaggcggat
ctttcccagccgcttacacacgccgactgggcagcagaggggttttctgcggtactcttg
gacccgccgcgtgacggggcttttgaagtggtgcgtcagatccggaaaacaggtgcccgg
cggttgctttatgtttcatgcaacccggcaactttggctcgtgacacggtcgaactggtt
aatcagggctaccgattaaaacgtgccggaatcctcgatatgttcccgcagacggcgcat
gtcgaggcgatggctttattcgaaatgagtaagtga
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