Pseudomonas cannabina pv. alisalensis: JGS08_06665
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Entry
JGS08_06665 CDS
T07379
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JGS08_06665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcab03019
]
JGS08_06665
03009 Ribosome biogenesis [BR:
pcab03009
]
JGS08_06665
Enzymes [BR:
pcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JGS08_06665
Messenger RNA biogenesis [BR:
pcab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JGS08_06665
Ribosome biogenesis [BR:
pcab03009
]
Prokaryotic type
rRNA helicases
JGS08_06665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QQN23332
LinkDB
All DBs
Position
1469134..1470846
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AA seq
570 aa
AA seq
DB search
MGLCGCTRGRPMTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQ
AQTGTGKTAAFALPILHLIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAV
YGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDD
LEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA
DQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIE
SLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLV
TPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRL
TADIGCSPRALAAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSGSSDRGDRPE
RERRAPVPLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVEL
PEDGLERLLTKLKDTRVAGKQLKLRRYRED
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgggtctttgcggatgcactagaggcagacccatgacccaggaaatcggcggcttcgcc
gctctcgaacttcatcccaatatcgttgcagctgtcgtcgccactggctacgaagagcct
tcggccattcagcagcaatcgatcccgattattctcgccggtcacgacatgattggtcag
gcgcaaaccggtacgggtaaaaccgctgcgttcgcactgcctatcctgcacctgatcgac
ccgagcaagcgcgagccgcaagcactgatcctggccccgacccgcgaactggcacttcag
gttgccaccgcgttcgagacctacgcaaaacaaatgccgggcgtaaccgtggtagcggtt
tacggcggcgcgcctatgggccctcagctcaaggctatccgcaatggcgcacagatcgtt
gtcgccaccccgggccgtctctgcgaccacttgcgtcgcgacgagaaagttctggcgacc
gtgaaccatctggttctcgacgaagcggacgaaatgctcaaactgggcttcatggacgac
ctcgaagtcatcttcaaggccatgcctgaaacccgtcagaccgtactgttttcggcgacg
ctgccacagtcgatccgtgccattgccgaacgccatctgcgcgatccgaagcacgtcaag
atccagaccaagactcagaccgttaccgcgatcgagcaggctcacctgctggttcacgct
gaccagaagacctcggctgtattgagcctgctggaagtcgaagacttcgacgccctgatc
atgttcgtccgcaccaagcaggcgaccctcgatctggccagcgcccttgaagccaaaggc
tacaaggctgccgcactgaacggcgacatcgcccagaaccagcgtgagcgcgttatcgaa
tccctcaaggatggccgtctggacatcgttgtggcgaccgacgtagctgcccgtggtctt
gacgtcccgcgtatcacccacgttttcaacgtggacatgccttacgatccagagtcctac
gttcaccgtatcggccgtaccggccgtgcaggtcgcgaaggtcgtgcactgctgctggtc
actcctcgcgagcgccgcatgctgcaagtgatcgagcgtgtgaccggtcagaaggttgcg
gaagtccgcctgccggatgcccaggctgttctcgatgcgcgcatcaagaaactgaccaac
agcctgtcgccgctggtggccgacgccgagtcgactcacggtgatctgctggatcgtctg
actgccgacatcggttgcagccctcgtgcccttgctgccgcactgctgcgcaaggctacc
aacggtcaggccctgaccttggcagccatcgagcgcgagcgtccactggtcccgaacaac
gcacctcgcggtgatcgtccagagcgcagcggcagcagcgaccgtggtgatcgtcctgag
cgtgagcgtcgtgcgccggttccattggccgaaggccgtgcccgttgccgtaccgcgctg
ggtgcgcgtgatggcatcgctgccaagaacctgctgggtgccatcctcaacgaaggtggt
ctggctcgcgaagcgatcggccgtatccaggtccgtgacagcttcagcctggtcgaactg
ccggaagatggtcttgagcgtctgttgaccaagctcaaggacacccgcgttgctggcaag
cagctcaagctgcgtcgctatcgcgaagactga
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