Pseudomonas cannabina pv. alisalensis: JGS08_08590
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Entry
JGS08_08590 CDS
T07379
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcab03016
]
JGS08_08590 (rnd)
Enzymes [BR:
pcab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JGS08_08590 (rnd)
Transfer RNA biogenesis [BR:
pcab03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JGS08_08590 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QQN23658
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All DBs
Position
1864316..1865449
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AA seq
377 aa
AA seq
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MAIDIHWIRDDDSLALHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGKSAWLIDPL
LINDWRPLSALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSMGY
SRLVQEVLNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRLSDDKYAWL
LDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREARARNLPRNRIV
REHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTASSLPPEEWPPALPEPL
PVDAAGSIKRLRAIGQQYAEKMDMAPELMLRKKTLEALLKSGYPDGPYQLPDSLRGWRRE
LMGQALLDSLATPGEQS
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatatacactggattcgcgacgacgacagcctcgccctgcattgcgcacaa
tggcagtcactgccttttgtggcgctcgacaccgagttcatgcgggtcgacaccttctac
ccgatagccgcgttgctgcagattggcgacggtaaaagcgcctggctgattgatccattg
ctgatcaacgactggcgacccctgtctgcgttgcttgaaaaccccgccgtcatcaaagtg
gtgcatgcgtgcagcgaagacctcgaagtcctgctgcgcctgaccggcagcttgccggtc
ccgctgtttgacacgcaattggcagccgcttacctgaacctcggtttttccatgggctat
tcgcgtctggtgcaggaggtcctcaatatcgacctgcccaagggcgaaacccgttccgac
tggttgcaacgcccgctgtcggagacgcagatcagctacgccgccgaagacgctgtgcac
cttgccgagctgtttgccatcctgcgtccgcgcctgtccgacgacaaatacgcctggttg
ctggacgacggcgcggaactggtcgccaatctgcgccgcgaagtcgatccgtatgaggtc
tatcgcgacgccaaactggcctggaagctgtcccgcgcccagttggcggtgctgcgcgaa
ctgtgcgcctggcgtgaacgcgaggcccgtgcccgtaatctgccgcgtaaccgcatcgtg
cgtgaacactcgctctggccgttggccaaaacgcaaccggacaacctcggcgcgctggcc
cgcatcgaagacatgcacccgcgcaccgtgcgtcatgacggcgagttcctgttggagctg
atcaagaccgccagcagcctgccgccggaagaatggccgccagcgctgcccgagccgctg
ccggtcgacgctgcgggctcgatcaagcgcctgcgtgcgatcggccagcagtacgccgaa
aaaatggacatggcgccggagctgatgctgcgcaagaagacccttgaagcgctgctcaag
agcggctaccccgacggtccctaccaattacccgattcgctgcgtggctggcgtcgcgaa
ttgatgggtcaggcactgctcgacagcctggccacccccggagaacagtcttga
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