Pseudomonas cannabina pv. alisalensis: JGS08_08950
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Entry
JGS08_08950 CDS
T07379
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JGS08_08950 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcab03019
]
JGS08_08950 (rne)
03009 Ribosome biogenesis [BR:
pcab03009
]
JGS08_08950 (rne)
Enzymes [BR:
pcab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JGS08_08950 (rne)
Messenger RNA biogenesis [BR:
pcab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JGS08_08950 (rne)
Ribosome biogenesis [BR:
pcab03009
]
Prokaryotic type
rRNA processing factors
JGS08_08950 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QQN23723
LinkDB
All DBs
Position
complement(1943786..1947091)
Genome browser
AA seq
1101 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRES
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQ
RLRDDSPEAHNNQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEV
AEPVATPAPVVHEPSLFKGLVKSLVSLFASKEEPAAPVVVEKPVAEQRPARNEERRNGRQ
QSRGRNNRRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREESAP
REERPARTSRERKPREAREDRPVRELREPLDAAPAVNLAREERPERAPREERQPRAPREE
RQPRAEQAAPAVSEEEEVLLNEEQTQDDNQESNDGNDGDRPRRRSRGQRRRSNRRERQRD
ANGNVIEGSEENGSEEEGSADLSAGLGFTAAASAASSVISAPAEADAHQQAERANNAAAD
SDAEPAQQTPVAEAPATEAPVVETAITDTEAPTQAVETPVAAEPTVEVPAVEAPVADDAP
VARPAPEVEVQPKAVETPAIAAQSELFEAPHAERVVPFKPTPEPTPEAPVEAAVHEEVPA
TESSELPTPVPASVAEPVVVEPMAEKEESAPYVAPKATIEEQAPASQEQEPAVAETPAAP
AVSSTGRAPNDPREVRRRKREEEARRQQEAAGNSAPAAEAAPVAADAESVQPSPATEEKA
EDSVIQLQHEAEKETEHKPLA
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccagcgc
ctctacgacctggacatcgagtcaggtgcacgcgagcagaagaaggccaacatctataaa
ggccgaatcactcgtatcgaacccagcctcgaggctgcctttgtcgatttcggctctgag
cgccacggcttcctgcccctcaaggaaatctcccgcgagtacttcaagaaagcccctgaa
ggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgag
aaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagccttgccggccgt
tatctggtactgatgccgaacaacccgcgtgccggtggcatttcgcgtcgtatcgaaggc
gaagagcgcaacgaactgcgcgaagcgctgaacggcctgatcgcccctgccgacatgggc
ctgatcgttcgcaccgcaggtcttggccgcagcagcgaagaaatgcagtgggacctcgac
tatctgctgcaactctggaccgccatcaaagaggcgtccctggatcgctccgcccctttc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggtgaggtcctgatcgacagcatcgaagcccaggaagaagccctgaccttcatccgt
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgttccgctgttc
aaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtcgtcgaattgcct
tccggtggctccatcgttatcgatccgaccgaagcactggtgtccatcgacatcaactcg
gcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaaccttgaagcg
gctgaggaaattgcccgtcaactgcgtctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgacgcctgccaagaaccagcgcgccgtggaagagaaagtccgcgaaagc
ctggaagccgaccgcgcccgcgttcaggtcggtcgcatttcgcgctttggcctgctggaa
atgtcccgtcagcgcctgcgtccgtcgctcggcgagagcagcggcatcgtttgcccgcgc
tgcaacggcaccggcatcatccgcgacgtcgaatcgctgtcgctggcaatcctgcgcctg
atcgaagaagaagccctgaaagaccgcactgccgaagtgcgcgctcaggtgccgatcccg
gttgctgcgttcctgctcaacgaaaagcgcaactcgatcaccaagatcgaactgcgtacg
cgtgcgcgcatcatcattctgccgaacgatcatctggaaacgccgcacttcgaagttcag
cgtctgcgcgatgacagtccggaagcacataacaaccagaccagctacgaaatcgccgct
gcggctgccgaagttgaagaaatcgccccgctggccgctgcaacccgcaccctggtgcgt
caggaagctgcggtcaagaccgccccggcacgtgccaatgcgccggttccggtcgaagtg
gccgaacctgttgcaactccggccccggtggttcacgaaccaagcctgttcaaaggcctg
gtgaagtccctggtcagcctgttcgcgagcaaggaagagcctgctgcgccggtggtggtt
gaaaagcctgtggccgagcagcgtcctgcgcgcaacgaagaacgccgcaatggtcgtcaa
caaagccgtggccgcaacaatcgtcgcgatgaagagcgcaagccgcgtgaagaacgtgct
ccacgcgaagagcgtgccgagcgcgcccctcgcgaagagcgtgcgccgcgtgaagagcgt
gcacctcgtgaagaacgcgccgtacgcgaaccccgtgaagcccgtgaagaatcggcaccg
cgcgaagaacgtccggcccgcacctctcgcgagcgcaagccgcgtgaagctcgtgaagac
cgtccggtccgcgaactgcgtgagccgctggatgccgcgcctgccgtgaacctcgcccgt
gaagaacgtccagaacgcgctccgcgtgaagaacgtcagccacgcgcgcctcgcgaagag
cgtcaaccacgcgccgaacaggccgcgcctgccgtgagcgaagaagaggaagtgctgctc
aacgaagagcagacgcaagacgacaatcaggaaagcaacgacggcaacgacggtgatcgc
cctcgccgccgctcccgtggtcagcgtcgccgcagcaaccgtcgcgagcgtcagcgtgat
gccaacggcaatgtgatcgaaggctctgaagaaaacggtagcgaagaagaaggcagcgcc
gacctgtcggctggcctgggcttcaccgccgcagcttctgccgccagcagcgtgatcagt
gctccggccgaagccgatgcgcatcagcaggccgaacgtgccaacaatgccgcagccgac
tcggatgcagagcctgcgcaacagacgccggttgccgaagcacctgcaactgaagcccct
gtcgttgaaacagccatcactgacactgaagcgccgacgcaagcggtagaaacgcccgtt
gcggcagagccgaccgtcgaagtgccagccgtcgaagccccggtagcagacgatgctcca
gtagcccggcccgctccagaggttgaagttcagccaaaggcagtggaaacacctgctatc
gcggcgcagtccgagctgttcgaagcaccgcacgcagaacgcgtcgtgccgttcaaacca
acgccagagccgacgccagaagcgccggtcgaagctgcggtccatgaggaagtgcctgcc
actgaatcatctgaactgccaacgccggtgccggcttcggtcgctgaacccgtcgttgtc
gagccgatggccgagaaggaggagtcagctccttacgtcgcgcccaaagccaccatcgaa
gaacaggcacctgcatcgcaagagcaagagccagccgttgcagaaacgcctgctgcgcca
gcggtcagcagcaccggccgcgcgccgaacgatccgcgtgaagttcgtcgccgcaagcgc
gaagaagaagcacgtcgtcagcaggaagccgctggcaacagcgctccagccgccgaagca
gcacctgttgccgctgatgcagaatcggtccagccttcgccggcaaccgaggaaaaagct
gaagattctgtgattcagctgcaacatgaagccgagaaagagaccgagcataaacccctc
gcctaa
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